Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 C 1.53002 * 109.46799 * 239.99798 * 2 1 3 5 5 C 1.50696 * 109.46997 * 120.00001 * 2 1 3 6 6 C 1.35322 * 126.12519 * 185.26181 * 5 2 1 7 7 C 1.39872 * 107.91889 * 180.14743 * 6 5 2 8 8 C 1.50697 * 125.89868 * 179.86972 * 7 6 5 9 9 C 1.52997 * 109.47466 * 124.71470 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 N 1.30835 * 108.19997 * 359.60090 * 7 6 5 19 19 N 1.34943 * 126.12839 * 4.97534 * 5 2 1 20 20 H 0.96997 * 126.03723 * 359.97438 * 19 5 2 21 21 H 1.08999 * 109.47046 * 300.00374 * 1 2 3 22 22 H 1.09001 * 109.47187 * 60.00132 * 1 2 3 23 23 H 1.08994 * 109.47219 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46874 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47288 * 299.99603 * 3 2 1 26 26 H 1.08992 * 109.47179 * 60.00163 * 3 2 1 27 27 H 1.08994 * 109.47326 * 300.00046 * 4 2 1 28 28 H 1.09004 * 109.47359 * 60.00579 * 4 2 1 29 29 H 1.09003 * 109.47362 * 180.02562 * 4 2 1 30 30 H 1.07996 * 126.03834 * 0.03317 * 6 5 2 31 31 H 1.09002 * 109.47120 * 4.71223 * 8 7 6 32 32 H 1.08998 * 109.46862 * 244.72025 * 8 7 6 33 33 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 3.3244 -0.8183 1.6178 7 6 3.3573 -1.5548 2.8064 8 6 4.5940 -1.9168 3.5877 9 6 4.4478 -1.4275 5.0299 10 6 5.6843 -1.7901 5.8112 11 1 6.4938 -2.3166 5.3275 12 6 5.7827 -1.4488 7.1435 13 7 4.7973 -0.8073 7.7325 14 14 7.3158 -1.8977 8.1118 15 1 8.3048 -0.7945 8.0123 16 1 6.9561 -2.1131 9.5364 17 1 7.9052 -3.1424 7.5566 18 7 2.1283 -1.8701 3.1259 19 7 1.2737 -1.3483 2.1462 20 1 0.3074 -1.4306 2.1293 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2492 28 1 1.6766 -0.2075 -2.1393 29 1 3.1299 -0.7218 -1.2491 30 1 4.1793 -0.4096 1.0996 31 1 5.4637 -1.4451 3.1303 32 1 4.7231 -2.9991 3.5825 33 1 3.5781 -1.8992 5.4872 34 1 4.3187 -0.3451 5.0349 35 1 4.8664 -0.5676 8.6698 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = 17.358052 kcal Electronic energy + Delta-G solvation = -14830.965666 eV Core-core repulsion = 12442.490780 eV Total energy + Delta-G solvation = -2388.474886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.32174 -37.74710 -35.89828 -33.90257 -31.30386 -30.27729 -28.17978 -28.10770 -27.12720 -23.88194 -22.86803 -20.59059 -20.02748 -18.45317 -18.10219 -16.51727 -15.95242 -15.59986 -14.94555 -14.82465 -14.71108 -14.49136 -14.33957 -13.95452 -13.18136 -13.09926 -12.96465 -12.84594 -12.58235 -12.55898 -12.27523 -11.99711 -11.87351 -11.76536 -11.64883 -11.28020 -11.14311 -10.54588 -10.10137 -9.48675 -8.17673 -6.30341 0.99708 1.41815 1.44647 1.55801 1.88244 2.03453 2.43777 3.15352 3.48742 3.80672 3.95306 4.01962 4.26012 4.45474 4.68192 4.72682 4.77337 4.82901 4.86732 4.88571 4.95976 5.01713 5.07465 5.10727 5.18272 5.26171 5.43284 5.46624 5.50354 5.71173 5.74390 5.85718 6.23271 6.51725 6.85083 6.87525 7.39144 8.94906 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.058643 B = 0.005053 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.350290 B = 5539.503182 C = 5614.707938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.002 4.002 3 C -0.137 4.137 4 C -0.134 4.134 5 C 0.110 3.890 6 C -0.284 4.284 7 C 0.074 3.926 8 C -0.027 4.027 9 C 0.041 3.959 10 C -0.543 4.543 11 H 0.069 0.931 12 C -0.004 4.004 13 N -0.938 5.938 14 Si 0.972 3.028 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.260 1.260 18 N -0.338 5.338 19 N -0.474 5.474 20 H 0.443 0.557 21 H 0.054 0.946 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.085 0.915 32 H 0.067 0.933 33 H -0.014 1.014 34 H -0.017 1.017 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 2.829 -19.646 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 C -0.195 4.195 4 C -0.191 4.191 5 C -0.020 4.020 6 C -0.313 4.313 7 C -0.091 4.091 8 C -0.066 4.066 9 C 0.003 3.997 10 C -0.581 4.581 11 H 0.087 0.913 12 C -0.201 4.201 13 N -0.578 5.578 14 Si 0.796 3.204 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.184 1.184 18 N -0.162 5.162 19 N -0.183 5.183 20 H 0.288 0.712 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.175 0.825 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.004 0.996 34 H 0.001 0.999 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.953 2.289 -18.637 20.391 hybrid contribution 0.506 0.191 0.620 0.823 sum -7.447 2.480 -18.017 19.652 Atomic orbital electron populations 1.21994 0.92540 1.02707 1.03761 1.19419 0.96718 0.95159 0.89113 1.21893 1.01754 0.93131 1.02705 1.21866 1.01713 0.99963 0.95594 1.21537 0.91071 0.95963 0.93448 1.21311 0.97694 1.12120 1.00203 1.22726 0.93758 0.97076 0.95559 1.20046 0.91432 1.00669 0.94501 1.18818 0.95615 0.94043 0.91183 1.21723 1.03364 1.37077 0.95924 0.91297 1.26075 1.00039 0.94853 0.99121 1.70149 1.34189 1.41343 1.12121 0.85348 0.78667 0.79185 0.77233 1.19456 1.20949 1.18357 1.77331 1.01841 1.24311 1.12705 1.46348 1.09589 1.44051 1.18268 0.71151 0.92726 0.88940 0.92045 0.92180 0.89228 0.93627 0.92967 0.89335 0.92196 0.82471 0.89677 0.91406 0.99575 0.99906 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 7.57 71.98 0.55 -1.55 16 2 C 0.00 -0.04 0.93 -52.93 -0.05 -0.09 16 3 C -0.14 -2.31 8.30 71.98 0.60 -1.71 16 4 C -0.13 -1.98 8.40 71.98 0.60 -1.38 16 5 C 0.11 3.08 5.60 41.41 0.23 3.31 16 6 C -0.28 -9.60 10.05 21.99 0.22 -9.37 16 7 C 0.07 3.15 6.49 43.10 0.28 3.43 16 8 C -0.03 -1.26 5.73 29.85 0.17 -1.09 16 9 C 0.04 2.38 4.93 29.85 0.15 2.53 16 10 C -0.54 -32.35 9.11 25.60 0.23 -32.12 16 11 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 12 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 13 N -0.94 -60.12 13.29 21.45 0.28 -59.83 16 14 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 18 N -0.34 -14.53 12.67 -47.39 -0.60 -15.13 16 19 N -0.47 -14.97 7.10 -48.00 -0.34 -15.31 16 20 H 0.44 10.87 7.98 -213.33 -1.70 9.16 16 21 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.80 7.92 -2.39 -0.02 0.78 16 24 H 0.06 1.08 7.91 -2.39 -0.02 1.06 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.16 4.58 8.04 -2.91 -0.02 4.55 16 31 H 0.08 3.55 8.12 -2.39 -0.02 3.53 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 33 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 35 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -74.23 293.89 4.16 -70.07 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -0.65 Total: 10.40 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.44 Total: -37.79 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -0.66 Total: -90.28 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.23 4.16 -70.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.424 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds