Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.53002 * 109.47047 * 240.00118 * 2 1 3 5 5 H 1.08996 * 109.46809 * 173.59517 * 4 2 1 6 6 C 1.50701 * 109.47047 * 293.59098 * 4 2 1 7 7 H 1.08000 * 120.00042 * 114.38714 * 6 4 2 8 8 C 1.37881 * 120.00323 * 294.39607 * 6 4 2 9 9 N 1.31506 * 120.00215 * 182.43632 * 8 6 4 10 10 Si 1.86804 * 119.99908 * 2.43775 * 8 6 4 11 11 H 1.48498 * 109.46901 * 94.43365 * 10 8 6 12 12 H 1.48493 * 109.47083 * 214.43769 * 10 8 6 13 13 H 1.48505 * 109.46645 * 334.43771 * 10 8 6 14 14 C 1.52991 * 109.47243 * 53.59066 * 4 2 1 15 15 C 1.50708 * 109.47186 * 66.81978 * 14 4 2 16 16 N 1.30496 * 125.64758 * 61.46432 * 15 14 4 17 17 C 1.34127 * 109.25461 * 180.02562 * 16 15 14 18 18 C 1.34665 * 108.02083 * 359.97438 * 17 16 15 19 19 N 1.35042 * 125.65215 * 241.16851 * 15 14 4 20 20 C 1.46505 * 126.39506 * 359.97438 * 19 15 14 21 21 H 1.08997 * 109.46799 * 54.60142 * 1 2 3 22 22 H 1.08999 * 109.47319 * 174.60132 * 1 2 3 23 23 H 1.09007 * 109.46697 * 294.60612 * 1 2 3 24 24 H 1.09000 * 109.47180 * 119.99894 * 2 1 3 25 25 H 1.09000 * 109.47502 * 71.73657 * 3 2 1 26 26 H 1.09000 * 109.47390 * 191.73619 * 3 2 1 27 27 H 1.08996 * 109.47180 * 311.73500 * 3 2 1 28 28 H 0.97000 * 120.00692 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.47299 * 186.81562 * 14 4 2 30 30 H 1.08998 * 109.47359 * 306.82248 * 14 4 2 31 31 H 1.08007 * 125.98981 * 180.02562 * 17 16 15 32 32 H 1.08003 * 126.59261 * 180.02562 * 18 17 16 33 33 H 1.08998 * 109.46488 * 94.39214 * 20 19 15 34 34 H 1.08995 * 109.47416 * 214.39095 * 20 19 15 35 35 H 1.09001 * 109.47199 * 334.39129 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1239 -0.6230 -1.3084 6 6 1.6713 -2.1804 -1.1725 7 1 0.9731 -2.5991 -1.8823 8 6 2.2252 -2.9811 -0.1962 9 7 1.9407 -4.2645 -0.1586 10 14 3.3798 -2.2428 1.0733 11 1 2.6101 -1.8790 2.2900 12 1 4.4258 -3.2354 1.4275 13 1 4.0210 -1.0270 0.5112 14 6 1.4028 -0.0990 -2.4932 15 6 1.9046 1.3120 -2.6623 16 7 3.1483 1.6596 -2.8499 17 6 3.2232 2.9944 -2.9572 18 6 1.9785 3.4929 -2.8318 19 7 1.1409 2.4257 -2.6503 20 6 -0.3123 2.4814 -2.4728 21 1 -0.3633 0.5953 -0.8377 22 1 -0.3634 -1.0231 -0.0967 23 1 -0.3633 0.4279 0.9344 24 1 1.8933 -0.5138 0.8900 25 1 1.8576 1.8924 0.9759 26 1 3.1098 1.4496 -0.2090 27 1 1.5162 2.0130 -0.7668 28 1 2.3306 -4.8279 0.5281 29 1 1.6699 -0.6871 -3.3711 30 1 0.3189 -0.0879 -2.3793 31 1 4.1238 3.5688 -3.1171 32 1 1.6951 4.5343 -2.8715 33 1 -0.5435 2.6497 -1.4210 34 1 -0.7202 3.2972 -3.0696 35 1 -0.7542 1.5388 -2.7958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = 63.276581 kcal Electronic energy + Delta-G solvation = -16192.557348 eV Core-core repulsion = 13806.073639 eV Total energy + Delta-G solvation = -2386.483709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.94041 -36.80579 -33.71146 -32.14697 -30.83713 -28.40595 -26.95891 -26.24832 -25.35357 -21.97803 -20.92011 -19.70501 -18.40840 -16.82509 -16.29845 -15.76088 -14.71401 -14.49209 -13.53445 -13.41548 -13.18394 -12.89440 -12.73637 -12.72043 -12.51816 -11.97061 -11.64717 -11.28520 -11.05462 -10.85874 -10.33777 -10.21390 -9.94734 -9.58019 -9.42058 -9.23421 -9.15332 -8.88043 -8.47085 -7.79242 -6.02937 -4.01189 2.42964 3.12261 3.33731 3.45246 3.52578 3.63706 4.48901 4.84496 5.05410 5.15511 5.19409 5.29276 5.42773 5.68663 5.75627 5.84456 5.97526 6.01569 6.23192 6.26843 6.41003 6.49212 6.59290 6.60822 6.67950 6.78631 7.13063 7.14298 7.17960 7.32524 7.55237 7.61062 7.84076 8.53917 8.61881 8.99907 9.60802 11.09777 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.037521 B = 0.010051 C = 0.009641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.065660 B = 2785.145589 C = 2903.474518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.162 4.162 4 C 0.029 3.971 5 H 0.043 0.957 6 C -0.508 4.508 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.902 5.902 10 Si 0.874 3.126 11 H -0.281 1.281 12 H -0.296 1.296 13 H -0.258 1.258 14 C -0.027 4.027 15 C 0.249 3.751 16 N -0.495 5.495 17 C -0.029 4.029 18 C -0.082 4.082 19 N -0.467 5.467 20 C 0.070 3.930 21 H 0.040 0.960 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 14.621 -2.953 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.219 4.219 4 C 0.009 3.991 5 H 0.061 0.939 6 C -0.546 4.546 7 H 0.092 0.908 8 C -0.127 4.127 9 N -0.540 5.540 10 Si 0.704 3.296 11 H -0.208 1.208 12 H -0.223 1.223 13 H -0.182 1.182 14 C -0.066 4.066 15 C -0.013 4.013 16 N -0.213 5.213 17 C -0.177 4.177 18 C -0.213 4.213 19 N -0.151 5.151 20 C -0.073 4.073 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.696 13.943 -2.912 14.715 hybrid contribution -0.063 1.077 0.989 1.463 sum -3.760 15.019 -1.924 15.602 Atomic orbital electron populations 1.21822 0.96287 1.02542 0.98643 1.21421 0.95512 0.93999 1.00514 1.22335 1.01577 0.98108 0.99906 1.19200 0.96788 0.94774 0.88318 0.93886 1.20942 1.27164 0.91072 1.15440 0.90787 1.24920 0.95827 0.94538 0.97452 1.69893 1.44794 1.04629 1.34674 0.86977 0.81167 0.79374 0.82121 1.20795 1.22334 1.18201 1.20304 0.99662 0.84838 1.01756 1.23808 0.86242 0.90862 1.00413 1.70320 1.17730 1.12589 1.20708 1.22218 0.96450 0.91439 1.07603 1.22444 0.91498 0.92950 1.14420 1.45432 1.07901 1.07084 1.54692 1.22055 0.77930 1.04307 1.02994 0.94143 0.90878 0.95069 0.92875 0.95150 0.93037 0.91951 0.92765 0.89833 0.90984 0.82141 0.81781 0.90574 0.90291 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.37 37.16 0.31 -2.23 16 2 C -0.10 -2.07 2.18 -90.62 -0.20 -2.26 16 3 C -0.16 -3.15 7.85 37.16 0.29 -2.86 16 4 C 0.03 0.68 1.28 -91.77 -0.12 0.56 16 5 H 0.04 1.12 6.81 -51.93 -0.35 0.76 16 6 C -0.51 -13.81 8.04 -34.44 -0.28 -14.09 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.07 2.12 5.46 -17.82 -0.10 2.03 16 9 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 10 Si 0.87 22.36 24.54 -169.99 -4.17 18.19 16 11 H -0.28 -7.04 7.06 56.52 0.40 -6.65 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.26 -6.51 6.25 56.52 0.35 -6.16 16 14 C -0.03 -0.53 4.79 -27.88 -0.13 -0.66 16 15 C 0.25 4.58 4.32 -155.42 -0.67 3.91 16 16 N -0.50 -9.84 10.87 -10.81 -0.12 -9.95 16 17 C -0.03 -0.47 11.87 -17.81 -0.21 -0.68 16 18 C -0.08 -1.13 11.30 -16.57 -0.19 -1.32 16 19 N -0.47 -6.90 1.83 -121.28 -0.22 -7.12 16 20 C 0.07 0.75 9.24 59.85 0.55 1.30 16 21 H 0.04 0.64 4.22 -51.93 -0.22 0.42 16 22 H 0.07 1.51 7.27 -51.93 -0.38 1.13 16 23 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.05 1.26 3.97 -51.93 -0.21 1.06 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.10 7.74 -51.93 -0.40 0.70 16 27 H 0.06 1.10 3.32 -51.93 -0.17 0.93 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.08 1.70 8.13 -51.93 -0.42 1.28 16 30 H 0.07 1.28 4.59 -51.93 -0.24 1.04 16 31 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.94 6.59 -51.93 -0.34 0.60 16 LS Contribution 263.27 15.07 3.97 3.97 Total: -1.00 -31.90 263.27 -5.35 -37.25 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.84 Total: 0.60 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.74 Total: -16.30 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.43 Total: -43.70 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.17 Total: 18.19 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.90 -5.35 -37.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.524 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds