Wall clock time and date at job start Mon Mar 30 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32867 * 124.83246 * 2 1 4 4 C 1.39618 * 115.59949 * 180.26480 * 3 2 1 5 5 O 1.36469 * 139.99001 * 179.97438 * 4 3 2 6 6 N 1.41251 * 108.10876 * 180.02562 * 5 4 3 7 7 C 1.29918 * 108.86729 * 0.02562 * 6 5 4 8 8 C 1.50698 * 125.85730 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47019 * 269.95635 * 8 7 6 10 10 H 1.07993 * 119.99959 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99683 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99813 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00014 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46926 * 90.00328 * 13 11 9 15 15 H 1.48503 * 109.46926 * 209.99714 * 13 11 9 16 16 H 1.48497 * 109.47399 * 330.00236 * 13 11 9 17 17 C 1.37617 * 113.23911 * 0.02562 * 4 3 2 18 18 S 1.75629 * 124.82830 * 180.30798 * 2 1 3 19 19 H 1.09003 * 109.47362 * 179.72312 * 1 2 3 20 20 H 1.08996 * 109.46854 * 299.71835 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.71792 * 1 2 3 22 22 H 1.07995 * 122.19871 * 0.26799 * 3 2 1 23 23 H 1.09005 * 109.46850 * 29.95608 * 8 7 6 24 24 H 1.09003 * 109.46842 * 149.95461 * 8 7 6 25 25 H 0.96999 * 120.00394 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2659 1.0906 0.0000 4 6 3.6440 0.8666 -0.0058 5 8 4.8165 1.5649 -0.0088 6 7 5.8807 0.6361 -0.0156 7 6 5.3888 -0.5664 -0.0172 8 6 6.1850 -1.8458 -0.0234 9 6 6.4447 -2.2689 -1.4463 10 1 6.0710 -1.6709 -2.2642 11 6 7.1604 -3.4190 -1.7038 12 7 7.3866 -3.7885 -2.9455 13 14 7.8087 -4.4521 -0.2890 14 1 6.7922 -5.4663 0.0898 15 1 9.0584 -5.1363 -0.7077 16 1 8.0908 -3.5751 0.8757 17 6 3.9771 -0.4687 -0.0112 18 16 2.5101 -1.4417 -0.0077 19 1 -0.3634 -1.0277 -0.0050 20 1 -0.3633 0.5094 0.8925 21 1 -0.3634 0.5182 -0.8874 22 1 1.8445 2.0849 0.0043 23 1 7.1347 -1.6852 0.4870 24 1 5.6234 -2.6257 0.4909 25 1 7.8904 -4.5973 -3.1267 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548662.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:35 Heat of formation + Delta-G solvation = 66.301080 kcal Electronic energy + Delta-G solvation = -12465.724789 eV Core-core repulsion = 10152.740252 eV Total energy + Delta-G solvation = -2312.984537 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.20284 -36.43414 -34.33336 -32.41625 -31.05221 -29.02871 -26.61411 -23.39061 -22.76280 -19.80771 -19.77219 -17.41887 -17.00557 -15.49815 -15.27651 -14.93770 -14.28797 -13.74913 -13.51573 -13.09374 -12.76164 -12.37990 -12.21924 -11.64471 -11.49328 -11.16781 -10.98739 -10.69835 -10.58002 -10.34475 -9.80865 -9.42362 -8.71427 -8.39377 -7.93465 -6.19918 -4.22606 0.72576 1.49514 2.13027 2.47517 2.87311 3.09798 3.21128 3.29643 3.31173 4.29869 4.53943 4.96275 5.01219 5.14227 5.24451 5.26962 5.35861 5.71492 5.83013 6.04774 6.18349 6.43422 6.72971 6.82189 7.43339 7.80395 8.30604 8.81380 9.36294 10.92488 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.008470 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.435125 B = 3305.130457 C = 3695.065171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.151 4.151 3 C -0.129 4.129 4 C 0.063 3.937 5 O -0.086 6.086 6 N -0.307 5.307 7 C 0.203 3.797 8 C 0.044 3.956 9 C -0.522 4.522 10 H 0.076 0.924 11 C 0.078 3.922 12 N -0.890 5.890 13 Si 0.875 3.125 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.263 1.263 17 C -0.297 4.297 18 S 0.199 5.801 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.149 0.851 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 4.648 7.479 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.271 4.271 3 C -0.162 4.162 4 C -0.005 4.005 5 O -0.096 6.096 6 N -0.055 5.055 7 C 0.027 3.973 8 C 0.006 3.994 9 C -0.560 4.560 10 H 0.094 0.906 11 C -0.126 4.126 12 N -0.527 5.527 13 Si 0.701 3.299 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.416 4.416 18 S 0.461 5.539 19 H 0.091 0.909 20 H 0.099 0.901 21 H 0.100 0.900 22 H 0.167 0.833 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.720 3.799 7.358 15.178 hybrid contribution 0.238 0.496 0.467 0.721 sum -12.483 4.295 7.825 15.346 Atomic orbital electron populations 1.20384 0.86795 1.03416 1.03356 1.24487 1.00536 0.96182 1.05869 1.18533 0.87378 1.00554 1.09709 1.20431 0.90190 0.89758 1.00107 1.89409 1.10261 1.29534 1.80437 1.80120 1.02314 0.98292 1.24751 1.23156 0.89620 0.96275 0.88280 1.18552 0.94672 0.85844 1.00362 1.20662 1.36386 1.09688 0.89306 0.90574 1.24891 0.95026 0.96895 0.95743 1.69871 1.39773 1.24537 1.18566 0.86838 0.79138 0.80885 0.83005 1.19726 1.20745 1.18725 1.24512 0.98767 0.97034 1.21298 1.83974 0.91682 1.04854 1.73354 0.90854 0.90114 0.90026 0.83338 0.93417 0.94020 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.35 36.01 0.37 -0.28 15 2 C -0.15 -1.92 6.46 -36.16 -0.23 -2.15 15 3 C -0.13 -1.84 10.01 -40.92 -0.41 -2.25 15 4 C 0.06 1.19 7.89 -39.29 -0.31 0.88 15 5 O -0.09 -1.84 12.21 2.68 0.03 -1.81 15 6 N -0.31 -7.27 12.87 33.86 0.44 -6.84 15 7 C 0.20 4.74 6.44 -82.16 -0.53 4.21 15 8 C 0.04 1.08 4.61 -29.04 -0.13 0.95 15 9 C -0.52 -14.90 9.65 -34.44 -0.33 -15.23 15 10 H 0.08 2.41 7.98 -52.49 -0.42 1.99 15 11 C 0.08 2.22 5.47 -17.82 -0.10 2.12 15 12 N -0.89 -26.86 13.96 55.43 0.77 -26.09 15 13 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 15 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.26 -5.98 6.54 56.52 0.37 -5.61 15 17 C -0.30 -6.05 7.23 -38.56 -0.28 -6.33 15 18 S 0.20 3.16 23.29 -107.50 -2.50 0.65 15 19 H 0.07 0.53 8.14 -51.93 -0.42 0.10 15 20 H 0.08 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.08 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.15 1.65 8.06 -52.49 -0.42 1.23 15 23 H 0.05 1.16 7.20 -51.93 -0.37 0.79 15 24 H 0.04 0.95 7.57 -51.93 -0.39 0.56 15 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 242.20 15.07 3.65 3.65 Total: -1.00 -31.76 242.20 -6.28 -38.03 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -2.04 Total: -5.60 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.95 Total: -18.09 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 1.21 Total: -32.92 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.50 Total: 0.65 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.76 -6.28 -38.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548662.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.334 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds