Wall clock time and date at job start Mon Mar 30 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32867 * 124.83246 * 2 1 4 4 C 1.39618 * 115.59949 * 180.26480 * 3 2 1 5 5 O 1.36469 * 139.99001 * 179.97438 * 4 3 2 6 6 N 1.41251 * 108.10876 * 180.02562 * 5 4 3 7 7 C 1.29918 * 108.86729 * 0.02562 * 6 5 4 8 8 C 1.50698 * 125.85730 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47019 * 269.95635 * 8 7 6 10 10 H 1.07993 * 119.99959 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99683 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99813 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00014 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46926 * 90.00328 * 13 11 9 15 15 H 1.48503 * 109.46926 * 209.99714 * 13 11 9 16 16 H 1.48497 * 109.47399 * 330.00236 * 13 11 9 17 17 C 1.37617 * 113.23911 * 0.02562 * 4 3 2 18 18 S 1.75629 * 124.82830 * 180.30798 * 2 1 3 19 19 H 1.09003 * 109.47362 * 179.72312 * 1 2 3 20 20 H 1.08996 * 109.46854 * 299.71835 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.71792 * 1 2 3 22 22 H 1.07995 * 122.19871 * 0.26799 * 3 2 1 23 23 H 1.09005 * 109.46850 * 29.95608 * 8 7 6 24 24 H 1.09003 * 109.46842 * 149.95461 * 8 7 6 25 25 H 0.96999 * 120.00394 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2659 1.0906 0.0000 4 6 3.6440 0.8666 -0.0058 5 8 4.8165 1.5649 -0.0088 6 7 5.8807 0.6361 -0.0156 7 6 5.3888 -0.5664 -0.0172 8 6 6.1850 -1.8458 -0.0234 9 6 6.4447 -2.2689 -1.4463 10 1 6.0710 -1.6709 -2.2642 11 6 7.1604 -3.4190 -1.7038 12 7 7.3866 -3.7885 -2.9455 13 14 7.8087 -4.4521 -0.2890 14 1 6.7922 -5.4663 0.0898 15 1 9.0584 -5.1363 -0.7077 16 1 8.0908 -3.5751 0.8757 17 6 3.9771 -0.4687 -0.0112 18 16 2.5101 -1.4417 -0.0077 19 1 -0.3634 -1.0277 -0.0050 20 1 -0.3633 0.5094 0.8925 21 1 -0.3634 0.5182 -0.8874 22 1 1.8445 2.0849 0.0043 23 1 7.1347 -1.6852 0.4870 24 1 5.6234 -2.6257 0.4909 25 1 7.8904 -4.5973 -3.1267 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259548662.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:35 Heat of formation + Delta-G solvation = 44.974385 kcal Electronic energy + Delta-G solvation = -12466.649584 eV Core-core repulsion = 10152.740252 eV Total energy + Delta-G solvation = -2313.909332 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.76383 -37.66516 -36.20245 -34.45153 -32.15333 -31.02932 -27.81025 -25.41768 -24.07862 -21.40470 -21.10013 -19.17972 -18.91183 -17.11410 -16.75116 -16.31532 -16.14278 -15.00543 -14.57556 -14.54966 -14.44965 -14.15417 -13.35589 -13.15877 -13.02145 -12.62508 -12.57964 -12.39550 -12.15068 -11.83073 -11.81596 -11.41814 -10.88256 -9.71920 -9.25292 -8.39932 -6.50475 -0.60760 0.22835 0.86134 0.98421 1.34456 1.37183 1.40767 1.48500 1.61992 2.28787 2.92289 3.15465 3.56185 3.73785 3.96871 4.42109 4.53413 4.73176 4.75651 4.83641 4.91288 4.92951 5.06166 5.29305 5.32415 6.06310 6.16430 6.51750 7.12961 8.76540 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.008470 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.435125 B = 3305.130457 C = 3695.065171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.107 4.107 3 C -0.147 4.147 4 C 0.065 3.935 5 O -0.093 6.093 6 N -0.346 5.346 7 C 0.185 3.815 8 C 0.051 3.949 9 C -0.534 4.534 10 H 0.024 0.976 11 C 0.021 3.979 12 N -0.938 5.938 13 Si 0.950 3.050 14 H -0.252 1.252 15 H -0.277 1.277 16 H -0.246 1.246 17 C -0.346 4.346 18 S 0.202 5.798 19 H 0.086 0.914 20 H 0.110 0.890 21 H 0.104 0.896 22 H 0.187 0.813 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.128 4.356 9.229 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.227 4.227 3 C -0.178 4.178 4 C -0.004 4.004 5 O -0.105 6.105 6 N -0.094 5.094 7 C 0.011 3.989 8 C 0.013 3.987 9 C -0.572 4.572 10 H 0.042 0.958 11 C -0.178 4.178 12 N -0.577 5.577 13 Si 0.771 3.229 14 H -0.176 1.176 15 H -0.202 1.202 16 H -0.170 1.170 17 C -0.465 4.465 18 S 0.464 5.536 19 H 0.105 0.895 20 H 0.128 0.872 21 H 0.123 0.877 22 H 0.204 0.796 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.236 3.513 9.111 18.097 hybrid contribution 0.816 0.668 -0.169 1.068 sum -14.420 4.181 8.942 17.475 Atomic orbital electron populations 1.20700 0.82598 1.05162 1.05732 1.25180 1.02556 0.93783 1.01191 1.18941 0.84984 1.02963 1.10867 1.21225 0.91143 0.89077 0.98937 1.89322 1.11098 1.29350 1.80742 1.80001 1.03968 0.98957 1.26429 1.23073 0.91441 0.95684 0.88753 1.18378 0.95314 0.87229 0.97822 1.20732 1.36780 1.09587 0.90142 0.95803 1.25900 0.94840 0.98106 0.98960 1.70019 1.40810 1.25518 1.21327 0.85669 0.78841 0.79165 0.79231 1.17584 1.20202 1.16985 1.24697 0.98770 0.99087 1.23987 1.83878 0.90104 1.06345 1.73303 0.89500 0.87176 0.87723 0.79552 0.93338 0.92037 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.35 71.24 0.74 -0.15 15 2 C -0.11 -2.32 6.46 24.51 0.16 -2.17 15 3 C -0.15 -3.76 10.01 21.43 0.21 -3.55 15 4 C 0.06 2.43 7.89 22.46 0.18 2.61 15 5 O -0.09 -4.09 12.21 12.02 0.15 -3.95 15 6 N -0.35 -17.10 12.87 -46.78 -0.60 -17.70 15 7 C 0.19 8.96 6.44 43.65 0.28 9.24 15 8 C 0.05 2.54 4.61 29.10 0.13 2.68 15 9 C -0.53 -31.77 9.65 25.60 0.25 -31.52 15 10 H 0.02 1.61 7.98 -2.91 -0.02 1.59 15 11 C 0.02 1.22 5.47 84.66 0.46 1.69 15 12 N -0.94 -58.29 13.96 21.45 0.30 -57.99 15 13 Si 0.95 42.61 27.47 68.60 1.88 44.49 15 14 H -0.25 -10.46 7.11 99.48 0.71 -9.75 15 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 16 H -0.25 -10.33 6.54 99.48 0.65 -9.68 15 17 C -0.35 -14.25 7.23 22.93 0.17 -14.08 15 18 S 0.20 6.09 23.29 -56.49 -1.32 4.78 15 19 H 0.09 0.78 8.14 -2.39 -0.02 0.76 15 20 H 0.11 0.71 8.14 -2.39 -0.02 0.69 15 21 H 0.10 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.19 3.33 8.06 -2.91 -0.02 3.30 15 23 H 0.05 2.38 7.20 -2.38 -0.02 2.36 15 24 H 0.06 2.79 7.57 -2.39 -0.02 2.78 15 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 Total: -1.00 -73.50 242.20 4.14 -69.36 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: 1.15 Total: -3.74 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 2.58 Total: -35.25 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -0.30 Total: -75.69 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: 0.15 Total: -3.95 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.32 Total: 4.78 kcal Total: -73.50 4.14 -69.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548662.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.331 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds