Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 N 1.29911 * 125.85368 * 90.02635 * 11 10 9 13 13 O 1.41249 * 108.86579 * 179.97438 * 12 11 10 14 14 C 1.36469 * 108.11083 * 359.97438 * 13 12 11 15 15 C 1.39616 * 139.99269 * 180.02562 * 14 13 12 16 16 C 1.32877 * 115.59805 * 180.02562 * 15 14 13 17 17 S 1.75616 * 110.33899 * 359.97438 * 16 15 14 18 18 C 1.37620 * 106.76843 * 359.75483 * 14 13 12 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 23 23 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 24 24 H 1.08000 * 122.20340 * 359.97227 * 15 14 13 25 25 H 1.08001 * 124.82942 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 7 1.1114 -5.6258 -1.0565 13 8 0.4365 -6.7961 -0.6443 14 6 0.4239 -6.8203 0.7201 15 6 -0.0342 -7.6166 1.7714 16 6 0.2282 -7.1624 2.9923 17 16 1.1041 -5.6429 2.9030 18 6 1.0835 -5.6890 1.1434 19 1 -0.4849 0.8400 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6247 -2.5562 -0.8920 22 1 2.8720 -3.6035 -0.8927 23 1 2.8719 -3.6051 0.8873 24 1 -0.5675 -8.5406 1.6035 25 1 -0.0568 -7.6573 3.9090 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259649513.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = 64.375795 kcal Electronic energy + Delta-G solvation = -12362.893772 eV Core-core repulsion = 10049.825748 eV Total energy + Delta-G solvation = -2313.068024 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.45635 -36.10084 -34.89148 -32.86218 -30.31701 -28.84318 -25.64344 -23.88331 -22.01151 -20.53718 -19.79154 -17.82615 -16.41598 -15.72071 -15.25584 -14.91284 -14.51869 -14.19569 -13.36093 -13.01013 -12.38143 -12.23747 -12.03049 -11.56493 -11.27835 -10.95548 -10.85170 -10.83177 -10.44165 -10.04424 -9.52827 -9.25485 -8.75215 -8.42304 -8.12586 -6.06621 -4.11193 0.54750 1.34003 1.95194 2.26449 2.60388 2.87398 3.30685 3.35305 3.37481 4.34992 4.44391 4.78986 4.95332 5.10562 5.29341 5.59857 5.81768 5.87866 6.09356 6.22383 6.34932 6.74494 7.44791 7.53692 7.65540 7.89476 8.26721 8.94024 9.53363 11.04603 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.043551 B = 0.006808 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.772855 B = 4111.978770 C = 4442.623118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.054 4.054 11 C 0.179 3.821 12 N -0.301 5.301 13 O -0.079 6.079 14 C 0.063 3.937 15 C -0.122 4.122 16 C -0.178 4.178 17 S 0.202 5.798 18 C -0.302 4.302 19 H 0.263 0.737 20 H 0.021 0.979 21 H 0.023 0.977 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.153 0.847 25 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -13.159 7.395 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.093 4.093 11 C 0.003 3.997 12 N -0.048 5.048 13 O -0.091 6.091 14 C -0.005 4.005 15 C -0.156 4.156 16 C -0.316 4.316 17 S 0.463 5.537 18 C -0.422 4.422 19 H 0.073 0.927 20 H 0.039 0.961 21 H 0.041 0.959 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.170 0.830 25 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.626 -12.156 7.095 14.169 hybrid contribution -0.254 -0.037 -0.325 0.414 sum 1.372 -12.193 6.769 14.014 Atomic orbital electron populations 1.69960 1.06133 1.26992 1.49948 1.25012 0.94859 0.99359 0.94980 0.86589 0.79534 0.82784 0.78710 1.20110 1.21220 1.20112 1.21080 0.93069 0.90429 1.51831 0.92276 1.19078 0.93490 0.89968 0.98138 1.20708 0.98396 0.86977 1.03214 1.23285 0.92897 0.96245 0.87289 1.80123 1.13546 0.93779 1.17322 1.89428 1.66384 1.38229 1.15027 1.20540 0.98237 0.95276 0.86430 1.18714 1.06228 1.02216 0.88395 1.25673 1.04516 1.00392 1.01021 1.84109 1.55008 1.18649 0.95892 1.24580 1.15206 1.01958 1.00445 0.92735 0.96056 0.95860 0.90037 0.90173 0.82980 0.80164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.03 0.82 4.96 -27.88 -0.14 0.68 15 10 C -0.05 -1.15 5.72 -27.88 -0.16 -1.31 15 11 C 0.18 3.65 6.50 -82.15 -0.53 3.12 15 12 N -0.30 -6.38 12.87 33.86 0.44 -5.95 15 13 O -0.08 -1.53 12.21 2.68 0.03 -1.50 15 14 C 0.06 1.06 7.89 -39.29 -0.31 0.75 15 15 C -0.12 -1.49 10.16 -40.92 -0.42 -1.91 15 16 C -0.18 -1.85 11.15 28.88 0.32 -1.53 15 17 S 0.20 2.74 23.31 -107.50 -2.51 0.23 15 18 C -0.30 -5.40 7.23 -38.56 -0.28 -5.68 15 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 20 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.02 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 23 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.15 1.38 8.06 -52.49 -0.42 0.96 15 25 H 0.18 1.13 8.06 -52.49 -0.42 0.70 15 LS Contribution 245.44 15.07 3.70 3.70 Total: -1.00 -31.46 245.44 -6.63 -38.09 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: -2.08 Total: -5.76 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.93 Total: -19.18 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 1.17 Total: -31.89 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: 0.03 Total: -1.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.51 Total: 0.23 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.46 -6.63 -38.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649513.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.464 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds