Wall clock time and date at job start Mon Mar 30 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46848 * 2 1 4 4 C 1.53001 * 109.46837 * 240.00006 * 2 1 3 5 5 C 1.52997 * 109.47155 * 120.00269 * 2 1 3 6 6 C 1.52997 * 109.47422 * 53.96944 * 5 2 1 7 7 H 1.09001 * 109.47344 * 305.86397 * 6 5 2 8 8 C 1.50703 * 109.47188 * 65.85974 * 6 5 2 9 9 H 1.08003 * 119.99918 * 32.00612 * 8 6 5 10 10 C 1.37874 * 120.00250 * 212.00361 * 8 6 5 11 11 N 1.31520 * 119.99992 * 5.00849 * 10 8 6 12 12 Si 1.86796 * 120.00169 * 185.00492 * 10 8 6 13 13 H 1.48500 * 109.47052 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47166 * 120.00220 * 12 10 8 15 15 H 1.48498 * 109.47543 * 240.00446 * 12 10 8 16 16 C 1.50697 * 109.47565 * 185.86101 * 6 5 2 17 17 N 1.30502 * 125.64841 * 95.37629 * 16 6 5 18 18 C 1.34130 * 109.25695 * 179.90096 * 17 16 6 19 19 C 1.34674 * 108.01937 * 0.36377 * 18 17 16 20 20 N 1.35042 * 125.65191 * 275.69178 * 16 6 5 21 21 H 0.96999 * 126.39725 * 359.93457 * 20 16 6 22 22 H 1.08998 * 109.46976 * 299.99554 * 1 2 3 23 23 H 1.09002 * 109.47241 * 60.00045 * 1 2 3 24 24 H 1.09005 * 109.47061 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46814 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47545 * 299.99781 * 3 2 1 27 27 H 1.08998 * 109.46968 * 60.00441 * 3 2 1 28 28 H 1.09001 * 109.47200 * 314.14028 * 4 2 1 29 29 H 1.08999 * 109.47327 * 74.14103 * 4 2 1 30 30 H 1.09004 * 109.47232 * 194.13972 * 4 2 1 31 31 H 1.08998 * 109.47366 * 293.96954 * 5 2 1 32 32 H 1.08998 * 109.47084 * 173.96981 * 5 2 1 33 33 H 0.96997 * 119.99905 * 179.97438 * 11 10 8 34 34 H 1.07997 * 125.99393 * 180.12247 * 18 17 16 35 35 H 1.07993 * 126.58996 * 179.81400 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.4101 -2.1134 1.3273 7 1 0.3250 -2.0247 1.2747 8 6 1.9018 -2.9526 0.1761 9 1 2.8963 -2.8006 -0.2169 10 6 1.0822 -3.9144 -0.3754 11 7 -0.1612 -4.0335 0.0362 12 14 1.7378 -5.0483 -1.7072 13 1 3.1565 -4.7121 -1.9893 14 1 1.6455 -6.4573 -1.2472 15 1 0.9329 -4.8774 -2.9433 16 6 1.7981 -2.7682 2.6279 17 7 1.0869 -2.7666 3.7221 18 6 1.7409 -3.4461 4.6758 19 6 2.9052 -3.8786 4.1551 20 7 2.9420 -3.4487 2.8560 21 1 3.6562 -3.6041 2.2183 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.4863 -1.6505 -1.3838 29 1 1.8963 -0.0833 -2.1213 30 1 3.1006 -0.9439 -1.1328 31 1 1.7676 -0.1490 2.1359 32 1 3.1246 -0.8157 1.1968 33 1 -0.7379 -4.7099 -0.3520 34 1 1.3963 -3.6135 5.6855 35 1 3.6638 -4.4543 4.6644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259661087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:14 Heat of formation + Delta-G solvation = 31.374175 kcal Electronic energy + Delta-G solvation = -15939.826087 eV Core-core repulsion = 13551.958986 eV Total energy + Delta-G solvation = -2387.867101 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90860 -37.37790 -33.15729 -31.32533 -30.70208 -27.41371 -26.53262 -26.46639 -24.95882 -22.08098 -20.40767 -19.29085 -17.77133 -17.14802 -16.12125 -14.61624 -14.14657 -13.83762 -13.69559 -13.22311 -13.11863 -12.74625 -12.38620 -12.17098 -11.84569 -11.18294 -11.11195 -11.03071 -10.85685 -10.61697 -10.49953 -10.08784 -9.79933 -9.62049 -9.30190 -9.02711 -8.92925 -8.87654 -8.52262 -7.29260 -6.16072 -4.17364 3.11998 3.19736 3.29591 3.29806 4.23840 4.27113 4.33632 5.11635 5.57857 5.68772 5.72969 5.82261 5.98143 6.25536 6.26566 6.38284 6.49234 6.50055 6.55032 6.59105 6.67861 6.79356 6.91046 7.01336 7.08433 7.14140 7.30335 7.33117 7.61301 7.69394 7.75905 7.83546 8.20444 8.51060 8.88661 9.27968 9.41756 10.91620 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.017438 B = 0.015106 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.309695 B = 1853.125534 C = 2926.545417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.088 4.088 6 C 0.100 3.900 7 H 0.096 0.904 8 C -0.517 4.517 9 H 0.062 0.938 10 C 0.072 3.928 11 N -0.870 5.870 12 Si 0.881 3.119 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.281 1.281 16 C 0.279 3.721 17 N -0.523 5.523 18 C -0.039 4.039 19 C -0.102 4.102 20 N -0.560 5.560 21 H 0.414 0.586 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.019 0.981 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.151 0.849 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 3.895 0.906 6.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.194 4.194 5 C -0.126 4.126 6 C 0.080 3.920 7 H 0.114 0.886 8 C -0.555 4.555 9 H 0.080 0.920 10 C -0.133 4.133 11 N -0.506 5.506 12 Si 0.708 3.292 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.207 1.207 16 C 0.014 3.986 17 N -0.243 5.243 18 C -0.188 4.188 19 C -0.236 4.236 20 N -0.161 5.161 21 H 0.251 0.749 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.169 0.831 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.230 4.154 1.036 6.019 hybrid contribution 1.539 -1.406 -0.881 2.263 sum 5.769 2.748 0.155 6.392 Atomic orbital electron populations 1.21951 0.95123 1.03559 0.99307 1.20252 0.95476 0.93013 0.96360 1.21937 1.00161 0.97193 1.00442 1.22225 1.01007 1.01899 0.94225 1.21596 0.98684 0.96891 0.95474 1.17771 1.00460 0.89183 0.84564 0.88585 1.20970 1.00877 1.18231 1.15460 0.92029 1.24973 0.94731 0.97035 0.96548 1.69943 1.05372 1.33361 1.41937 0.86718 0.79375 0.81044 0.82044 1.19558 1.21100 1.20699 1.24838 0.82215 0.94591 0.97001 1.70334 1.30960 1.23081 0.99916 1.22134 0.93667 1.03454 0.99505 1.22382 1.03208 1.11039 0.87014 1.43224 1.19431 1.42647 1.10789 0.74913 0.94095 0.94467 0.89807 0.93628 0.93603 0.93602 0.88135 0.96227 0.94103 0.94344 0.94074 0.92612 0.83107 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.91 37.16 0.29 -2.42 16 2 C -0.05 -0.95 0.80 -154.51 -0.12 -1.07 16 3 C -0.14 -2.21 8.43 37.16 0.31 -1.89 16 4 C -0.14 -2.62 7.09 37.16 0.26 -2.35 16 5 C -0.09 -1.78 3.90 -26.73 -0.10 -1.88 16 6 C 0.10 2.34 2.02 -92.93 -0.19 2.15 16 7 H 0.10 2.54 5.18 -51.93 -0.27 2.27 16 8 C -0.52 -12.28 4.44 -34.44 -0.15 -12.43 16 9 H 0.06 1.43 6.76 -52.48 -0.35 1.08 16 10 C 0.07 1.82 5.02 -17.82 -0.09 1.73 16 11 N -0.87 -23.67 12.81 55.43 0.71 -22.96 16 12 Si 0.88 19.74 29.54 -169.99 -5.02 14.72 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.28 6.56 6.85 -155.42 -1.06 5.50 16 17 N -0.52 -12.74 11.25 -10.82 -0.12 -12.86 16 18 C -0.04 -0.80 11.87 -17.81 -0.21 -1.01 16 19 C -0.10 -1.91 12.04 -16.56 -0.20 -2.11 16 20 N -0.56 -11.43 5.91 -10.23 -0.06 -11.49 16 21 H 0.41 7.56 8.70 -40.82 -0.36 7.20 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.86 6.21 -51.93 -0.32 1.54 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 2.20 5.27 -51.93 -0.27 1.92 16 29 H 0.02 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.04 0.76 7.36 -51.93 -0.38 0.38 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 35 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -27.98 280.07 -6.85 -34.82 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.31 Total: 9.34 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.26 Total: -15.80 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.53 Total: -47.31 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.98 -6.85 -34.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.198 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds