Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46848 * 2 1 4 4 C 1.53001 * 109.46837 * 240.00006 * 2 1 3 5 5 C 1.52997 * 109.47155 * 120.00269 * 2 1 3 6 6 C 1.52997 * 109.47422 * 53.96944 * 5 2 1 7 7 H 1.09001 * 109.47344 * 305.86397 * 6 5 2 8 8 C 1.50703 * 109.47188 * 65.85974 * 6 5 2 9 9 H 1.08003 * 119.99918 * 32.00612 * 8 6 5 10 10 C 1.37874 * 120.00250 * 212.00361 * 8 6 5 11 11 N 1.31520 * 119.99992 * 5.00849 * 10 8 6 12 12 Si 1.86796 * 120.00169 * 185.00492 * 10 8 6 13 13 H 1.48500 * 109.47052 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47166 * 120.00220 * 12 10 8 15 15 H 1.48498 * 109.47543 * 240.00446 * 12 10 8 16 16 C 1.50697 * 109.47565 * 185.86101 * 6 5 2 17 17 N 1.30502 * 125.64841 * 95.37629 * 16 6 5 18 18 C 1.34130 * 109.25695 * 179.90096 * 17 16 6 19 19 C 1.34674 * 108.01937 * 0.36377 * 18 17 16 20 20 N 1.35042 * 125.65191 * 275.69178 * 16 6 5 21 21 H 0.96999 * 126.39725 * 359.93457 * 20 16 6 22 22 H 1.08998 * 109.46976 * 299.99554 * 1 2 3 23 23 H 1.09002 * 109.47241 * 60.00045 * 1 2 3 24 24 H 1.09005 * 109.47061 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46814 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47545 * 299.99781 * 3 2 1 27 27 H 1.08998 * 109.46968 * 60.00441 * 3 2 1 28 28 H 1.09001 * 109.47200 * 314.14028 * 4 2 1 29 29 H 1.08999 * 109.47327 * 74.14103 * 4 2 1 30 30 H 1.09004 * 109.47232 * 194.13972 * 4 2 1 31 31 H 1.08998 * 109.47366 * 293.96954 * 5 2 1 32 32 H 1.08998 * 109.47084 * 173.96981 * 5 2 1 33 33 H 0.96997 * 119.99905 * 179.97438 * 11 10 8 34 34 H 1.07997 * 125.99393 * 180.12247 * 18 17 16 35 35 H 1.07993 * 126.58996 * 179.81400 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.4101 -2.1134 1.3273 7 1 0.3250 -2.0247 1.2747 8 6 1.9018 -2.9526 0.1761 9 1 2.8963 -2.8006 -0.2169 10 6 1.0822 -3.9144 -0.3754 11 7 -0.1612 -4.0335 0.0362 12 14 1.7378 -5.0483 -1.7072 13 1 3.1565 -4.7121 -1.9893 14 1 1.6455 -6.4573 -1.2472 15 1 0.9329 -4.8774 -2.9433 16 6 1.7981 -2.7682 2.6279 17 7 1.0869 -2.7666 3.7221 18 6 1.7409 -3.4461 4.6758 19 6 2.9052 -3.8786 4.1551 20 7 2.9420 -3.4487 2.8560 21 1 3.6562 -3.6041 2.2183 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.4863 -1.6505 -1.3838 29 1 1.8963 -0.0833 -2.1213 30 1 3.1006 -0.9439 -1.1328 31 1 1.7676 -0.1490 2.1359 32 1 3.1246 -0.8157 1.1968 33 1 -0.7379 -4.7099 -0.3520 34 1 1.3963 -3.6135 5.6855 35 1 3.6638 -4.4543 4.6644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259661087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = 15.472804 kcal Electronic energy + Delta-G solvation = -15940.515623 eV Core-core repulsion = 13551.958986 eV Total energy + Delta-G solvation = -2388.556636 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.55222 -38.95630 -34.95649 -33.01072 -32.45107 -29.00368 -28.13628 -27.92939 -26.67532 -23.79566 -22.01898 -20.98603 -19.30307 -18.88374 -17.91045 -16.43356 -15.75827 -15.47997 -15.26218 -14.73994 -14.66077 -14.29085 -14.08542 -13.88328 -13.28364 -12.95689 -12.66835 -12.61984 -12.45531 -12.28815 -12.14761 -11.72893 -11.38983 -11.18012 -10.97464 -10.76902 -10.63400 -10.62123 -10.42072 -8.90170 -8.08381 -6.11837 1.39268 1.45318 1.52600 1.55139 2.42668 2.55975 2.75088 3.22507 4.04788 4.22469 4.26206 4.36750 4.57990 4.79630 4.83402 4.90944 4.93239 4.99619 5.08331 5.12751 5.20866 5.25825 5.27109 5.44918 5.51257 5.54331 5.69188 5.72579 5.78214 5.98393 6.07629 6.14009 6.37631 6.86744 7.03043 7.47773 7.62997 9.00188 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.017438 B = 0.015106 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.309695 B = 1853.125534 C = 2926.545417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.079 4.079 6 C 0.103 3.897 7 H 0.058 0.942 8 C -0.495 4.495 9 H 0.069 0.931 10 C 0.026 3.974 11 N -0.913 5.913 12 Si 0.934 3.066 13 H -0.255 1.255 14 H -0.295 1.295 15 H -0.285 1.285 16 C 0.247 3.753 17 N -0.563 5.563 18 C -0.070 4.070 19 C -0.076 4.076 20 N -0.557 5.557 21 H 0.424 0.576 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.258 0.742 34 H 0.177 0.823 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 4.349 0.842 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 C -0.190 4.190 4 C -0.189 4.189 5 C -0.118 4.118 6 C 0.082 3.918 7 H 0.076 0.924 8 C -0.533 4.533 9 H 0.087 0.913 10 C -0.174 4.174 11 N -0.551 5.551 12 Si 0.761 3.239 13 H -0.178 1.178 14 H -0.221 1.221 15 H -0.211 1.211 16 C -0.018 4.018 17 N -0.284 5.284 18 C -0.218 4.218 19 C -0.210 4.210 20 N -0.158 5.158 21 H 0.262 0.738 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.194 0.806 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.477 4.617 0.964 8.013 hybrid contribution 0.866 -1.534 -0.771 1.923 sum 7.343 3.084 0.192 7.966 Atomic orbital electron populations 1.21855 0.95908 1.01303 1.00254 1.20289 0.94838 0.94908 0.95256 1.21847 1.00846 0.94786 1.01545 1.22094 1.00608 1.00902 0.95270 1.21513 0.98791 0.95310 0.96167 1.17613 0.98434 0.90858 0.84857 0.92427 1.21109 1.00534 1.17037 1.14667 0.91261 1.25575 0.94761 0.98588 0.98463 1.70099 1.06762 1.34363 1.43916 0.85866 0.79527 0.78776 0.79720 1.17833 1.22147 1.21127 1.24687 0.83712 0.96420 0.97028 1.70243 1.32450 1.24484 1.01203 1.22700 0.94621 1.04093 1.00350 1.23119 1.03192 1.08864 0.85862 1.43243 1.18834 1.41963 1.11799 0.73788 0.93845 0.92730 0.93668 0.92486 0.92033 0.93050 0.91276 0.94225 0.93676 0.94994 0.93279 0.93304 0.80560 0.77607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 7.91 71.98 0.57 -4.65 16 2 C -0.05 -1.90 0.80 -52.18 -0.04 -1.94 16 3 C -0.13 -3.82 8.43 71.98 0.61 -3.21 16 4 C -0.13 -4.84 7.09 71.98 0.51 -4.33 16 5 C -0.08 -3.17 3.90 30.59 0.12 -3.05 16 6 C 0.10 4.86 2.02 -12.29 -0.02 4.84 16 7 H 0.06 3.20 5.18 -2.39 -0.01 3.19 16 8 C -0.49 -23.51 4.44 25.60 0.11 -23.40 16 9 H 0.07 3.13 6.76 -2.91 -0.02 3.11 16 10 C 0.03 1.35 5.02 84.65 0.43 1.77 16 11 N -0.91 -51.53 12.81 21.45 0.27 -51.26 16 12 Si 0.93 40.69 29.54 68.60 2.03 42.72 16 13 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 15 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 16 C 0.25 11.64 6.85 138.13 0.95 12.59 16 17 N -0.56 -27.63 11.25 -188.13 -2.12 -29.74 16 18 C -0.07 -2.81 11.87 83.52 0.99 -1.82 16 19 C -0.08 -2.63 12.04 83.09 1.00 -1.63 16 20 N -0.56 -21.78 5.91 -186.27 -1.10 -22.88 16 21 H 0.42 14.55 8.70 -92.71 -0.81 13.74 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.04 2.09 6.21 -2.38 -0.01 2.08 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 3.00 5.27 -2.39 -0.01 2.98 16 29 H 0.04 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.04 1.58 7.36 -2.39 -0.02 1.56 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 33 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.18 5.80 8.06 -2.91 -0.02 5.78 16 35 H 0.21 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -61.59 280.07 4.56 -57.02 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.26 Total: 28.96 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 5.22 Total: -24.82 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -2.94 Total: -103.88 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -61.59 4.56 -57.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.495 kcal (2) G-P(sol) polarization free energy of solvation -61.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds