Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53005 * 109.46776 * 119.99670 * 2 1 3 5 5 C 1.52993 * 109.46911 * 239.99691 * 2 1 3 6 6 C 1.52998 * 109.47659 * 53.02551 * 5 2 1 7 7 H 1.09001 * 109.46713 * 312.00832 * 6 5 2 8 8 C 1.50691 * 109.47540 * 192.00932 * 6 5 2 9 9 H 1.07995 * 120.00073 * 359.97438 * 8 6 5 10 10 C 1.37879 * 120.00100 * 179.97438 * 8 6 5 11 11 N 1.31516 * 119.99985 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00157 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46962 * 60.00044 * 12 10 8 14 14 H 1.48503 * 109.47033 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47056 * 300.00027 * 12 10 8 16 16 C 1.50701 * 109.47141 * 72.00301 * 6 5 2 17 17 N 1.30501 * 125.65186 * 257.03876 * 16 6 5 18 18 C 1.34130 * 109.25464 * 180.02562 * 17 16 6 19 19 C 1.34664 * 108.02131 * 359.97438 * 18 17 16 20 20 N 1.35045 * 125.64735 * 76.72792 * 16 6 5 21 21 H 0.96995 * 126.39523 * 359.97438 * 20 16 6 22 22 H 1.09006 * 109.47131 * 59.99667 * 1 2 3 23 23 H 1.08994 * 109.47745 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47227 * 300.00458 * 1 2 3 25 25 H 1.08996 * 109.47231 * 84.50432 * 3 2 1 26 26 H 1.08999 * 109.46742 * 204.50569 * 3 2 1 27 27 H 1.09004 * 109.47154 * 324.50015 * 3 2 1 28 28 H 1.08999 * 109.46884 * 60.00155 * 4 2 1 29 29 H 1.08998 * 109.46533 * 179.97438 * 4 2 1 30 30 H 1.08990 * 109.47289 * 299.99902 * 4 2 1 31 31 H 1.09001 * 109.47217 * 173.02910 * 5 2 1 32 32 H 1.09001 * 109.47741 * 293.02241 * 5 2 1 33 33 H 0.97000 * 120.00114 * 179.97438 * 11 10 8 34 34 H 1.07997 * 125.98786 * 180.02562 * 18 17 16 35 35 H 1.08001 * 126.59081 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 2.0399 -0.7213 -1.2492 6 6 1.3920 -0.1084 -2.4923 7 1 0.3168 -0.0210 -2.3359 8 6 1.6559 -0.9923 -3.6839 9 1 2.2289 -1.9001 -3.5665 10 6 1.1659 -0.6419 -4.9242 11 7 0.4686 0.4639 -5.0673 12 14 1.4937 -1.7372 -6.4015 13 1 0.9190 -3.0843 -6.1562 14 1 0.8647 -1.1423 -7.6080 15 1 2.9586 -1.8553 -6.6148 16 6 1.9761 1.2583 -2.7413 17 7 1.3964 2.3948 -2.4669 18 6 2.2072 3.4022 -2.8228 19 6 3.3323 2.8698 -3.3368 20 7 3.1887 1.5097 -3.2799 21 1 3.8360 0.8498 -3.5737 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.0683 1.8178 1.0229 26 1 3.0427 1.4732 -0.4263 27 1 1.3723 2.0639 -0.5968 28 1 1.6766 -1.7489 1.2493 29 1 3.1299 -0.7216 1.2491 30 1 1.6766 -0.2074 2.1392 31 1 3.1228 -0.6146 -1.3138 32 1 1.7821 -1.7787 -1.1890 33 1 0.1241 0.7106 -5.9399 34 1 1.9953 4.4557 -2.7152 35 1 4.1856 3.4117 -3.7171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259661093.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = 23.706485 kcal Electronic energy + Delta-G solvation = -16165.782612 eV Core-core repulsion = 13777.583015 eV Total energy + Delta-G solvation = -2388.199597 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.53445 -38.71726 -35.27350 -32.87297 -32.27242 -29.10098 -28.03678 -27.76813 -26.87286 -23.77937 -21.85245 -20.99610 -19.48471 -18.78241 -17.65946 -16.58547 -15.72609 -15.50445 -15.24420 -14.74628 -14.43584 -14.32939 -14.10821 -13.85976 -13.27076 -13.05315 -12.91808 -12.66046 -12.49587 -12.33728 -12.00084 -11.93398 -11.56315 -11.29040 -11.05762 -10.85865 -10.55986 -10.39504 -10.09921 -8.69602 -8.06448 -6.28892 1.39830 1.42314 1.48907 1.74365 2.40117 2.75715 2.91012 3.18492 4.08831 4.11386 4.19146 4.31703 4.64154 4.75071 4.83273 4.86995 4.92460 4.96948 5.03647 5.08546 5.13787 5.19237 5.30072 5.35407 5.46112 5.53670 5.58791 5.71084 5.77902 5.90237 5.98210 6.21146 6.44363 6.79924 7.12038 7.42030 7.82614 8.92398 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.012239 C = 0.009501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.646385 B = 2287.280216 C = 2946.236239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.131 4.131 5 C -0.085 4.085 6 C 0.110 3.890 7 H 0.034 0.966 8 C -0.546 4.546 9 H 0.065 0.935 10 C 0.026 3.974 11 N -0.894 5.894 12 Si 0.946 3.054 13 H -0.270 1.270 14 H -0.295 1.295 15 H -0.267 1.267 16 C 0.303 3.697 17 N -0.539 5.539 18 C -0.064 4.064 19 C -0.091 4.091 20 N -0.563 5.563 21 H 0.415 0.585 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.256 0.744 34 H 0.168 0.832 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 0.103 6.842 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.067 4.067 3 C -0.207 4.207 4 C -0.189 4.189 5 C -0.123 4.123 6 C 0.090 3.910 7 H 0.052 0.948 8 C -0.584 4.584 9 H 0.083 0.917 10 C -0.176 4.176 11 N -0.530 5.530 12 Si 0.773 3.227 13 H -0.195 1.195 14 H -0.221 1.221 15 H -0.192 1.192 16 C 0.038 3.962 17 N -0.260 5.260 18 C -0.211 4.211 19 C -0.225 4.225 20 N -0.163 5.163 21 H 0.252 0.748 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.186 0.814 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.932 0.378 7.068 8.627 hybrid contribution 0.992 -0.576 -1.833 2.163 sum 5.925 -0.199 5.235 7.908 Atomic orbital electron populations 1.21875 0.95209 1.01114 1.01032 1.20526 0.95520 0.95427 0.95195 1.22356 1.00480 0.97055 1.00776 1.21841 1.00636 1.00119 0.96268 1.21635 0.98464 0.98847 0.93362 1.17437 0.95487 0.84953 0.93121 0.94793 1.21414 1.35632 1.08201 0.93174 0.91672 1.25728 0.94554 0.95883 1.01479 1.70173 1.34971 1.23987 1.23906 0.85793 0.78632 0.79414 0.78902 1.19517 1.22106 1.19244 1.23596 0.82422 0.96505 0.93697 1.70030 1.31447 0.98357 1.26136 1.22473 0.92993 0.99084 1.06585 1.22833 1.03792 0.83453 1.12396 1.43114 1.17213 1.07416 1.48585 0.74803 0.94066 0.92862 0.92342 0.93494 0.95417 0.89975 0.92322 0.92882 0.92037 0.93643 0.92202 0.93454 0.81436 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 7.83 71.98 0.56 -4.24 16 2 C -0.07 -2.31 0.80 -52.18 -0.04 -2.35 16 3 C -0.15 -5.47 7.29 71.98 0.52 -4.94 16 4 C -0.13 -3.61 8.35 71.98 0.60 -3.01 16 5 C -0.08 -3.33 3.83 30.59 0.12 -3.21 16 6 C 0.11 5.28 2.00 -12.29 -0.02 5.26 16 7 H 0.03 1.86 5.66 -2.39 -0.01 1.85 16 8 C -0.55 -27.82 8.32 25.60 0.21 -27.60 16 9 H 0.07 3.19 7.74 -2.91 -0.02 3.17 16 10 C 0.03 1.36 5.30 84.65 0.45 1.81 16 11 N -0.89 -51.23 12.38 21.45 0.27 -50.97 16 12 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 C 0.30 14.17 3.34 138.13 0.46 14.64 16 17 N -0.54 -25.85 8.36 -188.13 -1.57 -27.43 16 18 C -0.06 -2.64 11.87 83.52 0.99 -1.65 16 19 C -0.09 -3.40 12.04 83.08 1.00 -2.40 16 20 N -0.56 -23.36 5.96 -186.27 -1.11 -24.47 16 21 H 0.42 15.85 8.91 -92.71 -0.83 15.02 16 22 H 0.04 1.75 6.04 -2.38 -0.01 1.73 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.05 1.50 7.90 -2.39 -0.02 1.48 16 26 H 0.03 1.04 7.25 -2.39 -0.02 1.02 16 27 H 0.08 3.46 4.68 -2.38 -0.01 3.45 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 31 H 0.04 1.73 7.91 -2.39 -0.02 1.71 16 32 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.17 5.89 8.06 -2.91 -0.02 5.86 16 35 H 0.19 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -61.09 277.79 4.71 -56.38 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.24 Total: 30.34 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 4.85 Total: -27.71 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -2.42 Total: -102.87 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -61.09 4.71 -56.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661093.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.087 kcal (2) G-P(sol) polarization free energy of solvation -61.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds