Wall clock time and date at job start Mon Mar 30 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.47284 * 125.83235 * 2 1 4 4 C 1.54223 * 103.05448 * 179.97438 * 3 2 1 5 5 N 1.46975 * 103.83449 * 359.77947 * 4 3 2 6 6 C 1.28257 * 110.18604 * 0.39104 * 5 4 3 7 7 C 1.50696 * 122.70440 * 179.83788 * 6 5 4 8 8 H 1.09005 * 109.47185 * 214.70728 * 7 6 5 9 9 C 1.50705 * 109.46967 * 94.71320 * 7 6 5 10 10 H 1.07995 * 120.00149 * 305.02452 * 9 7 6 11 11 C 1.37882 * 119.99612 * 124.74773 * 9 7 6 12 12 N 1.31507 * 120.00137 * 355.23001 * 11 9 7 13 13 Si 1.86797 * 119.99526 * 175.23168 * 11 9 7 14 14 H 1.48507 * 109.47453 * 59.99848 * 13 11 9 15 15 H 1.48497 * 109.47258 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47283 * 300.00123 * 13 11 9 17 17 C 1.52994 * 109.47537 * 334.71006 * 7 6 5 18 18 C 1.52998 * 109.47400 * 185.63076 * 17 7 6 19 19 C 1.52996 * 117.50427 * 243.44942 * 18 17 7 20 20 C 1.53003 * 60.00184 * 252.51109 * 19 18 17 21 21 H 1.08998 * 109.46730 * 270.04151 * 1 2 3 22 22 H 1.08997 * 109.46758 * 30.04393 * 1 2 3 23 23 H 1.08998 * 109.46732 * 150.04253 * 1 2 3 24 24 H 1.09001 * 110.70060 * 298.35506 * 3 2 1 25 25 H 1.08994 * 110.70158 * 61.57537 * 3 2 1 26 26 H 1.09000 * 110.55866 * 118.58341 * 4 3 2 27 27 H 1.09002 * 110.55671 * 241.27145 * 4 3 2 28 28 H 0.97003 * 119.99901 * 180.02562 * 12 11 9 29 29 H 1.09001 * 109.47466 * 305.63852 * 17 7 6 30 30 H 1.09003 * 109.46731 * 65.63212 * 17 7 6 31 31 H 1.09005 * 115.54470 * 29.16431 * 18 17 7 32 32 H 1.08999 * 117.49428 * 0.02562 * 19 18 17 33 33 H 1.08995 * 117.49963 * 145.01840 * 19 18 17 34 34 H 1.08998 * 117.49927 * 252.50695 * 20 19 18 35 35 H 1.08994 * 117.51294 * 107.47913 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3273 1.1941 0.0000 4 6 3.7493 0.5970 0.0007 5 7 3.5208 -0.8549 0.0065 6 6 2.2628 -1.1050 0.0006 7 6 1.7115 -2.5074 0.0008 8 1 0.7953 -2.5378 -0.5890 9 6 1.4119 -2.9293 1.4162 10 1 2.1852 -2.8828 2.1687 11 6 0.1489 -3.3691 1.7518 12 7 -0.8183 -3.3323 0.8615 13 14 -0.1881 -4.0172 3.4710 14 1 0.0972 -2.9526 4.4662 15 1 -1.6125 -4.4237 3.5763 16 1 0.6829 -5.1901 3.7375 17 6 2.7417 -3.4606 -0.6082 18 6 2.1307 -4.8573 -0.7373 19 6 2.7676 -5.9852 0.0769 20 6 2.9644 -5.9311 -1.4394 21 1 -0.3633 0.0007 1.0277 22 1 -0.3633 0.8896 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 2.1603 1.7899 -0.8973 25 1 2.1594 1.7906 0.8967 26 1 4.2916 0.8988 -0.8954 27 1 4.2918 0.9013 0.8958 28 1 -1.7069 -3.6414 1.0977 29 1 3.0332 -3.0989 -1.5943 30 1 3.6198 -3.5063 0.0361 31 1 1.0503 -4.8864 -0.8790 32 1 3.6217 -5.7321 0.7050 33 1 2.1062 -6.7566 0.4714 34 1 2.4326 -6.6669 -2.0426 35 1 3.9481 -5.6423 -1.8095 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259699983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:44 Heat of formation + Delta-G solvation = 49.692452 kcal Electronic energy + Delta-G solvation = -15698.815375 eV Core-core repulsion = 13311.742614 eV Total energy + Delta-G solvation = -2387.072761 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19695 -36.73032 -33.57314 -32.20450 -31.05886 -28.07000 -25.62025 -25.24864 -22.30409 -21.56672 -21.46547 -19.23628 -17.77671 -16.45126 -15.47609 -15.23031 -14.74608 -14.22587 -13.87448 -13.20001 -12.87282 -12.68308 -12.08808 -11.99978 -11.49829 -11.33611 -11.24614 -10.93171 -10.83944 -10.71052 -10.64247 -10.30245 -10.02758 -9.38540 -9.17528 -9.11428 -8.80657 -8.67932 -8.53389 -6.92382 -6.10957 -4.10239 3.29491 3.33780 3.37951 3.72971 4.03192 4.42242 4.74331 5.18151 5.28179 5.57996 5.59395 5.69642 5.82269 5.86587 5.91661 6.03558 6.18702 6.28483 6.35220 6.47081 6.52252 6.64707 6.69826 6.74202 6.86099 6.93339 7.13521 7.38018 7.39525 7.48549 7.72295 7.84733 8.26741 8.53785 8.93740 9.22436 9.52212 10.97666 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.012768 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.621938 B = 2192.428551 C = 3103.123624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.644 5.644 3 C 0.077 3.923 4 C 0.027 3.973 5 N -0.615 5.615 6 C 0.407 3.593 7 C 0.082 3.918 8 H 0.086 0.914 9 C -0.488 4.488 10 H 0.055 0.945 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.889 3.111 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.274 1.274 17 C -0.058 4.058 18 C -0.105 4.105 19 C -0.174 4.174 20 C -0.207 4.207 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.263 0.737 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 2.969 -2.958 4.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.366 5.366 3 C -0.048 4.048 4 C -0.104 4.104 5 N -0.345 5.345 6 C 0.133 3.867 7 C 0.062 3.938 8 H 0.104 0.896 9 C -0.527 4.527 10 H 0.073 0.927 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.211 4.211 20 C -0.244 4.244 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.340 2.615 -2.978 4.602 hybrid contribution -0.921 0.457 1.169 1.557 sum 1.419 3.072 -1.808 3.837 Atomic orbital electron populations 1.21288 0.77806 1.01686 1.01258 1.47970 1.05711 1.04229 1.78729 1.22487 0.92823 0.89465 1.00067 1.22919 0.94407 0.92383 1.00651 1.74261 1.14377 1.10229 1.35643 1.24332 0.86663 0.92053 0.83627 1.18050 0.95167 0.82058 0.98512 0.89647 1.20748 0.95982 1.42480 0.93519 0.92709 1.24842 0.95966 0.95056 0.96899 1.69818 1.01829 1.47332 1.34098 0.86691 0.77053 0.79657 0.84863 1.20491 1.21356 1.19977 1.21032 0.98316 0.92156 0.98108 1.22163 0.98628 0.90723 1.00824 1.22774 1.03145 1.02603 0.92575 1.22971 1.01775 1.04247 0.95455 0.93689 0.93831 0.89454 0.92519 0.92542 0.91653 0.91666 0.92718 0.94664 0.92491 0.87585 0.89555 0.90180 0.90201 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.34 10.96 59.85 0.66 3.00 16 2 N -0.64 -13.38 3.44 -178.03 -0.61 -14.00 16 3 C 0.08 1.34 7.77 -2.97 -0.02 1.32 16 4 C 0.03 0.50 8.06 -3.14 -0.03 0.47 16 5 N -0.61 -14.07 10.79 -57.40 -0.62 -14.69 16 6 C 0.41 9.44 6.61 -156.10 -1.03 8.40 16 7 C 0.08 1.98 2.02 -92.93 -0.19 1.79 16 8 H 0.09 2.17 5.67 -51.93 -0.29 1.88 16 9 C -0.49 -12.66 7.75 -34.44 -0.27 -12.93 16 10 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 11 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 12 N -0.89 -22.91 12.61 55.43 0.70 -22.21 16 13 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.06 -1.28 4.43 -26.73 -0.12 -1.40 16 18 C -0.11 -2.19 5.20 -90.62 -0.47 -2.66 16 19 C -0.17 -3.33 10.18 -26.73 -0.27 -3.60 16 20 C -0.21 -3.63 10.25 -26.73 -0.27 -3.91 16 21 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 1.81 6.81 -51.93 -0.35 1.46 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.33 7.81 -51.93 -0.41 0.92 16 31 H 0.11 2.41 8.07 -51.93 -0.42 1.99 16 32 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -26.96 290.34 -8.95 -35.92 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.66 Total: 2.74 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.11 Total: -7.71 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.53 Total: -50.90 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.96 -8.95 -35.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.610 kcal (2) G-P(sol) polarization free energy of solvation -26.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds