Wall clock time and date at job start Mon Mar 30 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.47284 * 125.83235 * 2 1 4 4 C 1.54223 * 103.05448 * 179.97438 * 3 2 1 5 5 N 1.46975 * 103.83449 * 359.77947 * 4 3 2 6 6 C 1.28257 * 110.18604 * 0.39104 * 5 4 3 7 7 C 1.50696 * 122.70440 * 179.83788 * 6 5 4 8 8 H 1.09005 * 109.47185 * 214.70728 * 7 6 5 9 9 C 1.50705 * 109.46967 * 94.71320 * 7 6 5 10 10 H 1.07995 * 120.00149 * 305.02452 * 9 7 6 11 11 C 1.37882 * 119.99612 * 124.74773 * 9 7 6 12 12 N 1.31507 * 120.00137 * 355.23001 * 11 9 7 13 13 Si 1.86797 * 119.99526 * 175.23168 * 11 9 7 14 14 H 1.48507 * 109.47453 * 59.99848 * 13 11 9 15 15 H 1.48497 * 109.47258 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47283 * 300.00123 * 13 11 9 17 17 C 1.52994 * 109.47537 * 334.71006 * 7 6 5 18 18 C 1.52998 * 109.47400 * 185.63076 * 17 7 6 19 19 C 1.52996 * 117.50427 * 243.44942 * 18 17 7 20 20 C 1.53003 * 60.00184 * 252.51109 * 19 18 17 21 21 H 1.08998 * 109.46730 * 270.04151 * 1 2 3 22 22 H 1.08997 * 109.46758 * 30.04393 * 1 2 3 23 23 H 1.08998 * 109.46732 * 150.04253 * 1 2 3 24 24 H 1.09001 * 110.70060 * 298.35506 * 3 2 1 25 25 H 1.08994 * 110.70158 * 61.57537 * 3 2 1 26 26 H 1.09000 * 110.55866 * 118.58341 * 4 3 2 27 27 H 1.09002 * 110.55671 * 241.27145 * 4 3 2 28 28 H 0.97003 * 119.99901 * 180.02562 * 12 11 9 29 29 H 1.09001 * 109.47466 * 305.63852 * 17 7 6 30 30 H 1.09003 * 109.46731 * 65.63212 * 17 7 6 31 31 H 1.09005 * 115.54470 * 29.16431 * 18 17 7 32 32 H 1.08999 * 117.49428 * 0.02562 * 19 18 17 33 33 H 1.08995 * 117.49963 * 145.01840 * 19 18 17 34 34 H 1.08998 * 117.49927 * 252.50695 * 20 19 18 35 35 H 1.08994 * 117.51294 * 107.47913 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3273 1.1941 0.0000 4 6 3.7493 0.5970 0.0007 5 7 3.5208 -0.8549 0.0065 6 6 2.2628 -1.1050 0.0006 7 6 1.7115 -2.5074 0.0008 8 1 0.7953 -2.5378 -0.5890 9 6 1.4119 -2.9293 1.4162 10 1 2.1852 -2.8828 2.1687 11 6 0.1489 -3.3691 1.7518 12 7 -0.8183 -3.3323 0.8615 13 14 -0.1881 -4.0172 3.4710 14 1 0.0972 -2.9526 4.4662 15 1 -1.6125 -4.4237 3.5763 16 1 0.6829 -5.1901 3.7375 17 6 2.7417 -3.4606 -0.6082 18 6 2.1307 -4.8573 -0.7373 19 6 2.7676 -5.9852 0.0769 20 6 2.9644 -5.9311 -1.4394 21 1 -0.3633 0.0007 1.0277 22 1 -0.3633 0.8896 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 2.1603 1.7899 -0.8973 25 1 2.1594 1.7906 0.8967 26 1 4.2916 0.8988 -0.8954 27 1 4.2918 0.9013 0.8958 28 1 -1.7069 -3.6414 1.0977 29 1 3.0332 -3.0989 -1.5943 30 1 3.6198 -3.5063 0.0361 31 1 1.0503 -4.8864 -0.8790 32 1 3.6217 -5.7321 0.7050 33 1 2.1062 -6.7566 0.4714 34 1 2.4326 -6.6669 -2.0426 35 1 3.9481 -5.6423 -1.8095 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259699983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:44 Heat of formation + Delta-G solvation = 34.954715 kcal Electronic energy + Delta-G solvation = -15699.454451 eV Core-core repulsion = 13311.742614 eV Total energy + Delta-G solvation = -2387.711837 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81493 -38.33632 -35.41380 -33.81131 -32.88289 -29.65698 -27.30364 -27.03932 -24.09276 -23.04499 -22.95009 -20.90341 -19.53160 -18.38066 -17.13949 -16.75218 -16.41229 -15.96364 -15.45585 -14.78646 -14.61197 -14.26812 -13.90112 -13.65727 -13.06975 -12.88345 -12.75609 -12.72405 -12.56899 -12.49995 -12.22027 -12.03117 -11.74766 -11.12057 -10.98259 -10.82895 -10.56573 -10.39423 -10.36180 -8.51721 -8.08303 -6.12718 1.42386 1.44740 1.50654 1.98961 2.48700 2.51856 3.19268 3.23571 3.80665 4.00637 4.21619 4.23793 4.31488 4.33371 4.43295 4.56196 4.74916 4.79331 4.82792 4.88301 5.00832 5.07629 5.09051 5.14943 5.18283 5.39486 5.41887 5.58239 5.72241 5.77386 5.89124 5.89715 6.33758 6.85388 6.92055 7.49822 7.54257 8.98814 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.012768 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.621938 B = 2192.428551 C = 3103.123624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.653 5.653 3 C 0.078 3.922 4 C 0.021 3.979 5 N -0.642 5.642 6 C 0.390 3.610 7 C 0.086 3.914 8 H 0.066 0.934 9 C -0.498 4.498 10 H 0.031 0.969 11 C 0.047 3.953 12 N -0.902 5.902 13 Si 0.933 3.067 14 H -0.283 1.283 15 H -0.280 1.280 16 H -0.275 1.275 17 C -0.045 4.045 18 C -0.131 4.131 19 C -0.178 4.178 20 C -0.174 4.174 21 H 0.030 0.970 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 3.403 -3.371 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.375 5.375 3 C -0.045 4.045 4 C -0.108 4.108 5 N -0.373 5.373 6 C 0.115 3.885 7 C 0.066 3.934 8 H 0.084 0.916 9 C -0.537 4.537 10 H 0.049 0.951 11 C -0.154 4.154 12 N -0.541 5.541 13 Si 0.760 3.240 14 H -0.209 1.209 15 H -0.205 1.205 16 H -0.200 1.200 17 C -0.083 4.083 18 C -0.149 4.149 19 C -0.215 4.215 20 C -0.211 4.211 21 H 0.048 0.952 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.576 3.063 -3.394 5.248 hybrid contribution -0.957 0.366 1.285 1.644 sum 1.619 3.429 -2.109 4.339 Atomic orbital electron populations 1.21230 0.77208 1.02470 1.00501 1.48174 1.06350 1.04752 1.78264 1.22669 0.91206 0.88513 1.02152 1.23077 0.95635 0.90125 1.01992 1.74171 1.14401 1.13332 1.35356 1.24151 0.87336 0.92325 0.84644 1.17886 0.94887 0.83475 0.97201 0.91570 1.20683 0.95630 1.43410 0.93974 0.95098 1.25261 0.95767 0.95149 0.99232 1.69890 1.01865 1.47362 1.34935 0.86005 0.77134 0.78920 0.81899 1.20911 1.20544 1.20027 1.20843 0.97184 0.92875 0.97420 1.21975 0.97750 0.90881 1.04290 1.22817 1.02911 1.01764 0.94047 1.23042 1.01635 1.02060 0.94370 0.95174 0.89920 0.91734 0.89629 0.91108 0.89699 0.90901 0.92641 0.94601 0.94120 0.89856 0.89851 0.89653 0.87955 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.82 10.96 127.77 1.40 6.22 16 2 N -0.65 -26.48 3.44 -717.16 -2.47 -28.94 16 3 C 0.08 2.54 7.77 86.64 0.67 3.21 16 4 C 0.02 0.76 8.06 86.70 0.70 1.46 16 5 N -0.64 -29.11 10.79 -335.51 -3.62 -32.73 16 6 C 0.39 18.12 6.61 138.36 0.91 19.04 16 7 C 0.09 4.21 2.02 -12.29 -0.02 4.19 16 8 H 0.07 3.48 5.67 -2.38 -0.01 3.46 16 9 C -0.50 -26.40 7.75 25.60 0.20 -26.20 16 10 H 0.03 1.75 7.82 -2.91 -0.02 1.73 16 11 C 0.05 2.42 5.45 84.66 0.46 2.89 16 12 N -0.90 -46.84 12.61 21.45 0.27 -46.57 16 13 Si 0.93 42.32 29.54 68.60 2.03 44.35 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 C -0.04 -2.02 4.43 30.59 0.14 -1.89 16 18 C -0.13 -5.45 5.20 -10.79 -0.06 -5.50 16 19 C -0.18 -6.70 10.18 30.59 0.31 -6.39 16 20 C -0.17 -5.76 10.25 30.60 0.31 -5.45 16 21 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.06 2.70 6.81 -2.39 -0.02 2.69 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.93 7.81 -2.39 -0.02 1.91 16 31 H 0.08 3.86 8.07 -2.38 -0.02 3.84 16 32 H 0.08 3.15 8.03 -2.39 -0.02 3.14 16 33 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -57.55 290.34 2.28 -55.26 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.05 Total: 17.06 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.03 Total: -8.43 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -5.82 Total: -108.24 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -57.55 2.28 -55.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.217 kcal (2) G-P(sol) polarization free energy of solvation -57.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds