Wall clock time and date at job start Mon Mar 30 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86796 * 119.99728 * 2 1 4 4 H 1.48498 * 109.46870 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46826 * 299.99470 * 3 2 1 6 6 H 1.48490 * 109.47587 * 59.99823 * 3 2 1 7 7 C 1.39924 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.41781 * 120.00393 * 0.02562 * 7 2 1 10 10 N 1.31933 * 126.43085 * 359.97274 * 9 7 2 11 11 O 1.21265 * 110.15783 * 180.02562 * 10 9 7 12 12 C 1.34388 * 110.09960 * 359.97438 * 11 10 9 13 13 C 1.47488 * 126.45161 * 179.97438 * 12 11 10 14 14 C 1.35076 * 123.06364 * 0.04518 * 13 12 11 15 15 S 1.70965 * 108.78702 * 179.69664 * 14 13 12 16 16 C 1.70798 * 91.03992 * 0.34060 * 15 14 13 17 17 N 1.28771 * 110.44777 * 359.65081 * 16 15 14 18 18 N 1.31934 * 107.10221 * 0.22904 * 12 11 10 19 19 H 0.96998 * 120.00177 * 0.02562 * 1 2 3 20 20 H 1.08001 * 125.60145 * 359.96655 * 14 13 12 21 21 H 1.08002 * 124.77806 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7016 1.3464 -0.0006 5 1 1.8829 2.3963 -1.2126 6 1 1.8829 2.3965 1.2124 7 6 2.0073 -1.2118 0.0005 8 1 3.0873 -1.2118 0.0010 9 6 1.2985 -2.4397 0.0005 10 7 -0.0125 -2.5875 0.0006 11 8 -0.3003 -3.7655 0.0011 12 6 0.8162 -4.5136 0.0009 13 6 0.8838 -5.9869 0.0018 14 6 -0.2133 -6.7750 0.0022 15 16 0.2838 -8.4107 -0.0052 16 6 1.9267 -7.9439 0.0018 17 7 2.0297 -6.6603 0.0016 18 7 1.8404 -3.6820 0.0052 19 1 -0.4850 0.8400 -0.0004 20 1 -1.2362 -6.4286 0.0024 21 1 2.7618 -8.6288 0.0008 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259843583.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:12 Heat of formation + Delta-G solvation = 107.983273 kcal Electronic energy + Delta-G solvation = -12254.824306 eV Core-core repulsion = 9840.106901 eV Total energy + Delta-G solvation = -2414.717405 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.016 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.27141 -39.57302 -34.48039 -33.06703 -31.47363 -29.21433 -26.51568 -25.54053 -22.62772 -21.60692 -19.81877 -18.43220 -17.17899 -16.24259 -15.92060 -15.24060 -14.65609 -14.30747 -14.01053 -13.24395 -13.04113 -11.80403 -11.33750 -11.32104 -10.96605 -10.43710 -10.40083 -10.13933 -9.78924 -9.62198 -9.56524 -9.14217 -8.85529 -7.85610 -6.65298 -4.66687 0.69263 1.39710 1.74464 2.23234 3.00791 3.11975 3.19218 3.51785 3.71321 3.97999 4.08835 4.78303 5.13214 5.30970 5.40067 5.74021 5.89371 6.51072 6.82637 7.24129 7.61185 7.81752 8.29540 8.46645 8.82504 10.24333 10.37830 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.092230 B = 0.006292 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.514549 B = 4448.859308 C = 4742.528687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.068 3.932 3 Si 0.926 3.074 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.431 4.431 8 H 0.095 0.905 9 C 0.289 3.711 10 N -0.414 5.414 11 O 0.032 5.968 12 C 0.170 3.830 13 C 0.162 3.838 14 C -0.264 4.264 15 S 0.179 5.821 16 C 0.001 3.999 17 N -0.424 5.424 18 N -0.478 5.478 19 H 0.278 0.722 20 H 0.187 0.813 21 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -13.416 -0.016 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.152 4.152 3 Si 0.750 3.250 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.471 4.471 8 H 0.113 0.887 9 C 0.037 3.963 10 N -0.140 5.140 11 O -0.012 6.012 12 C -0.052 4.052 13 C 0.028 3.972 14 C -0.407 4.407 15 S 0.432 5.568 16 C -0.298 4.298 17 N -0.138 5.138 18 N -0.219 5.219 19 H 0.089 0.911 20 H 0.205 0.795 21 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.035 -13.289 -0.020 13.329 hybrid contribution 0.307 1.654 0.005 1.683 sum -0.728 -11.634 -0.015 11.657 Atomic orbital electron populations 1.69883 1.07203 1.28758 1.34422 1.25870 0.95022 1.01255 0.93097 0.85961 0.80515 0.80099 0.78389 1.18286 1.19873 1.19868 1.18496 0.94389 0.86011 1.48252 0.88735 1.22336 0.85856 0.91817 0.96271 1.75552 1.16148 0.89737 1.32582 1.85364 1.33671 1.13710 1.68470 1.24699 0.84423 0.91916 1.04159 1.16930 0.86946 0.89091 1.04267 1.26471 1.05134 0.97384 1.11693 1.82647 1.03089 1.05312 1.65754 1.28503 1.00901 0.94604 1.05792 1.66538 1.28580 1.05514 1.13160 1.72413 1.28204 1.00385 1.20944 0.91125 0.79533 0.77993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.10 11.97 55.54 0.66 -21.44 14 2 C 0.07 1.87 5.49 -17.37 -0.10 1.78 14 3 Si 0.93 19.92 29.56 -169.99 -5.02 14.90 14 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 14 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 14 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 14 7 C -0.43 -12.62 9.52 -37.60 -0.36 -12.97 14 8 H 0.09 2.64 7.85 -52.49 -0.41 2.23 14 9 C 0.29 8.72 7.67 -157.68 -1.21 7.52 14 10 N -0.41 -12.41 10.45 30.32 0.32 -12.10 14 11 O 0.03 0.84 11.27 16.15 0.18 1.02 14 12 C 0.17 4.22 8.19 -13.87 -0.11 4.11 14 13 C 0.16 3.16 6.70 -84.75 -0.57 2.59 14 14 C -0.26 -3.88 10.88 29.61 0.32 -3.56 14 15 S 0.18 1.83 22.97 -107.50 -2.47 -0.64 14 16 C 0.00 0.02 12.19 51.48 0.63 0.64 14 17 N -0.42 -7.73 10.65 -12.43 -0.13 -7.86 14 18 N -0.48 -13.50 11.63 -11.41 -0.13 -13.64 14 19 H 0.28 7.14 8.29 -40.82 -0.34 6.80 14 20 H 0.19 2.43 8.06 -52.49 -0.42 2.01 14 21 H 0.20 1.61 8.06 -52.49 -0.42 1.19 14 LS Contribution 222.71 15.07 3.36 3.36 Total: -1.00 -34.73 222.71 -5.02 -39.75 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: -0.39 Total: -3.46 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.39 Total: 0.11 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.72 Total: -55.03 kcal Atomic # 8 Polarization: 0.84 SS G_CDS: 0.18 Total: 1.02 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.47 Total: -0.64 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -34.73 -5.02 -39.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259843583.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.734 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds