Wall clock time and date at job start Mon Mar 30 2020 03:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30429 * 1 3 3 Si 1.86794 * 120.00423 * 2 1 4 4 H 1.48502 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46781 * 299.99620 * 3 2 1 6 6 H 1.48501 * 109.47378 * 59.99618 * 3 2 1 7 7 C 1.40728 * 119.99353 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99425 * 180.02562 * 7 2 1 9 9 C 1.39148 * 120.00615 * 0.02562 * 7 2 1 10 10 O 1.35340 * 126.99125 * 0.03608 * 9 7 2 11 11 C 1.33980 * 108.03397 * 179.97438 * 10 9 7 12 12 C 1.50700 * 124.90804 * 180.02562 * 11 10 9 13 13 C 1.52992 * 117.50348 * 188.62084 * 12 11 10 14 14 C 1.52994 * 60.00194 * 252.50813 * 13 12 11 15 15 N 1.30415 * 110.19239 * 359.76173 * 11 10 9 16 16 C 1.34487 * 109.15804 * 0.39255 * 15 11 10 17 17 C 1.47032 * 126.70041 * 179.88828 * 16 15 11 18 18 O 1.21579 * 120.00017 * 179.68476 * 17 16 15 19 19 O 1.34881 * 120.00167 * 359.68311 * 17 16 15 20 20 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 21 21 H 1.09004 * 115.54566 * 334.32509 * 12 11 10 22 22 H 1.09004 * 117.49606 * 359.97438 * 13 12 11 23 23 H 1.08997 * 117.50246 * 145.01716 * 13 12 11 24 24 H 1.09001 * 117.50083 * 252.51388 * 14 13 12 25 25 H 1.09001 * 117.50397 * 107.48303 * 14 13 12 26 26 H 0.96700 * 117.00361 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3043 0.0000 0.0000 3 14 2.2384 1.6176 0.0000 4 1 3.6984 1.3462 -0.0006 5 1 1.8797 2.3963 -1.2126 6 1 1.8797 2.3964 1.2124 7 6 2.0078 -1.2188 0.0005 8 1 3.0879 -1.2188 0.0010 9 6 1.3120 -2.4239 0.0005 10 8 -0.0313 -2.5886 -0.0006 11 6 -0.2879 -3.9036 -0.0007 12 6 -1.6661 -4.5133 -0.0024 13 6 -1.7696 -6.0261 0.2011 14 6 -2.0362 -5.4198 -1.1781 15 7 0.8272 -4.5799 -0.0048 16 6 1.8633 -3.7225 0.0012 17 6 3.2918 -4.0706 0.0017 18 8 4.1317 -3.1915 0.0017 19 8 3.6706 -5.3651 0.0022 20 1 -0.4850 0.8401 0.0004 21 1 -2.4551 -3.8928 0.4225 22 1 -0.8408 -6.5805 0.3359 23 1 -2.6268 -6.4012 0.7602 24 1 -3.0687 -5.3959 -1.5264 25 1 -1.2828 -5.5752 -1.9503 26 1 4.6208 -5.5446 0.0030 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939582.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:32 Heat of formation + Delta-G solvation = -97.164202 kcal Electronic energy + Delta-G solvation = -14862.079158 eV Core-core repulsion = 12099.253363 eV Total energy + Delta-G solvation = -2762.825795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.16755 -40.45611 -37.99597 -36.74418 -36.06196 -34.79435 -31.63685 -28.08722 -25.63115 -24.12348 -23.19782 -21.70471 -21.03472 -19.70826 -18.86464 -17.98613 -17.28848 -17.03774 -16.35422 -15.96906 -15.71791 -15.29190 -14.41742 -14.07387 -13.50492 -13.34292 -13.19059 -12.77945 -12.40238 -12.33872 -12.08998 -12.03596 -11.52304 -11.42173 -11.37788 -11.32653 -11.02237 -9.66162 -9.16197 -6.98599 0.63622 1.24062 1.30898 1.52417 1.55738 2.06745 2.32289 2.38204 2.60107 2.92174 3.13926 3.67270 3.99020 4.16603 4.23596 4.67729 4.76051 4.81700 4.86830 5.04800 5.18064 5.35082 5.37703 5.71831 5.95426 5.99272 6.17188 6.24387 7.22994 7.53810 7.83431 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.023671 B = 0.011164 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.593204 B = 2507.538304 C = 3611.934056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.020 3.980 3 Si 1.013 2.987 4 H -0.256 1.256 5 H -0.248 1.248 6 H -0.248 1.248 7 C -0.402 4.402 8 H 0.127 0.873 9 C 0.194 3.806 10 O -0.215 6.215 11 C 0.102 3.898 12 C -0.079 4.079 13 C -0.139 4.139 14 C -0.151 4.151 15 N -0.438 5.438 16 C -0.300 4.300 17 C 0.569 3.431 18 O -0.574 6.574 19 O -0.512 6.512 20 H 0.312 0.688 21 H 0.135 0.865 22 H 0.084 0.916 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.075 0.925 26 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -1.539 -0.354 3.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.204 4.204 3 Si 0.829 3.171 4 H -0.179 1.179 5 H -0.172 1.172 6 H -0.171 1.171 7 C -0.427 4.427 8 H 0.144 0.856 9 C 0.139 3.861 10 O -0.106 6.106 11 C -0.106 4.106 12 C -0.098 4.098 13 C -0.176 4.176 14 C -0.188 4.188 15 N -0.167 5.167 16 C -0.417 4.417 17 C 0.422 3.578 18 O -0.471 6.471 19 O -0.324 6.324 20 H 0.124 0.876 21 H 0.152 0.848 22 H 0.102 0.898 23 H 0.154 0.846 24 H 0.153 0.847 25 H 0.094 0.906 26 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -3.960 -1.840 -0.357 4.382 hybrid contribution 1.064 1.099 0.015 1.530 sum -2.896 -0.742 -0.343 3.009 Atomic orbital electron populations 1.69614 1.09623 1.33475 1.25665 1.27615 0.96062 1.06088 0.90644 0.84695 0.79000 0.73018 0.80410 1.17897 1.17150 1.17120 1.19905 0.96597 0.87799 1.38403 0.85587 1.20646 0.79463 0.94820 0.91187 1.84705 1.23408 1.26890 1.75630 1.25086 0.96384 0.78285 1.10888 1.19964 0.87662 0.94122 1.08028 1.23052 1.03987 0.91225 0.99326 1.23121 1.03411 1.01063 0.91252 1.69480 0.97484 1.34843 1.14929 1.19958 0.90913 0.89840 1.40942 1.18964 0.86926 0.79722 0.72166 1.90711 1.53300 1.50041 1.53022 1.84649 1.33563 1.27503 1.86668 0.87590 0.84760 0.89769 0.84611 0.84705 0.90610 0.72354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -37.23 12.05 21.96 0.26 -36.97 15 2 C 0.02 0.98 5.51 85.51 0.47 1.45 15 3 Si 1.01 35.11 29.57 68.60 2.03 37.14 15 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 5 H -0.25 -7.88 7.11 99.48 0.71 -7.17 15 6 H -0.25 -7.86 7.11 99.48 0.71 -7.15 15 7 C -0.40 -22.13 8.96 23.10 0.21 -21.93 15 8 H 0.13 7.01 6.15 -2.91 -0.02 7.00 15 9 C 0.19 11.42 6.86 23.19 0.16 11.58 15 10 O -0.21 -12.21 9.15 -9.96 -0.09 -12.30 15 11 C 0.10 5.19 7.82 88.32 0.69 5.88 15 12 C -0.08 -2.91 6.33 -11.54 -0.07 -2.98 15 13 C -0.14 -4.09 10.12 30.59 0.31 -3.78 15 14 C -0.15 -4.45 10.23 30.59 0.31 -4.14 15 15 N -0.44 -23.71 10.75 -290.29 -3.12 -26.83 15 16 C -0.30 -17.21 7.16 41.74 0.30 -16.91 15 17 C 0.57 29.91 8.32 70.13 0.58 30.50 15 18 O -0.57 -31.29 15.76 19.57 0.31 -30.99 15 19 O -0.51 -21.86 13.45 -57.95 -0.78 -22.64 15 20 H 0.31 13.00 8.29 -92.71 -0.77 12.23 15 21 H 0.13 4.40 8.14 -2.39 -0.02 4.39 15 22 H 0.08 2.89 7.84 -2.38 -0.02 2.87 15 23 H 0.14 2.88 8.14 -2.39 -0.02 2.86 15 24 H 0.13 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 15 26 H 0.42 12.28 9.11 -74.06 -0.67 11.61 15 Total: -1.00 -71.38 247.31 2.13 -69.25 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.56 Total: 23.67 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 2.96 Total: -0.34 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -2.86 Total: -63.80 kcal Atomic # 8 Polarization: -65.36 SS G_CDS: -0.56 Total: -65.92 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -71.38 2.13 -69.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939582.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.914 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds