Wall clock time and date at job start Mon Mar 30 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48506 * 109.46873 * 275.36287 * 3 2 1 5 5 H 1.48493 * 109.47259 * 35.36165 * 3 2 1 6 6 H 1.48498 * 109.47106 * 155.36560 * 3 2 1 7 7 C 1.40170 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00362 * 342.12882 * 7 2 1 9 9 C 1.40695 * 119.99682 * 162.12689 * 7 2 1 10 10 C 1.40802 * 120.72051 * 329.92634 * 9 7 2 11 11 C 1.37750 * 119.96768 * 180.02562 * 10 9 7 12 12 C 1.38267 * 121.55617 * 359.61409 * 11 10 9 13 13 C 1.39127 * 121.04603 * 0.60719 * 12 11 10 14 14 O 1.34865 * 133.36490 * 179.23979 * 13 12 11 15 15 N 1.41383 * 109.28501 * 180.02562 * 14 13 12 16 16 C 1.30201 * 109.56493 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 126.31477 * 180.02562 * 16 15 14 18 18 C 1.40190 * 119.59073 * 359.58540 * 13 12 11 19 19 H 0.97006 * 120.00051 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.01361 * 0.05389 * 10 9 7 21 21 H 1.08004 * 119.21743 * 180.02562 * 11 10 9 22 22 H 1.07995 * 119.47525 * 179.89113 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.3753 2.1118 -1.3940 5 1 1.4999 2.6173 0.8102 6 1 3.5907 1.4100 0.5836 7 6 2.0079 -1.2139 0.0005 8 1 1.5070 -2.1266 0.2880 9 6 3.3639 -1.2435 -0.3734 10 6 3.8740 -0.3172 -1.3030 11 6 5.2042 -0.3605 -1.6585 12 6 6.0679 -1.2944 -1.1167 13 6 5.6200 -2.2375 -0.1971 14 8 6.2239 -3.2463 0.4636 15 7 5.2774 -3.8974 1.2877 16 6 4.1160 -3.3240 1.1550 17 17 2.6487 -3.7735 1.9666 18 6 4.2739 -2.2375 0.1945 19 1 -0.4850 0.8401 -0.0004 20 1 3.2228 0.4273 -1.7368 21 1 5.5827 0.3561 -2.3724 22 1 7.1042 -1.2992 -1.4207 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983636.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:06 Heat of formation + Delta-G solvation = 44.302362 kcal Electronic energy + Delta-G solvation = -12634.471528 eV Core-core repulsion = 10182.656254 eV Total energy + Delta-G solvation = -2451.815274 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.52687 -36.64951 -36.44794 -33.98100 -32.40978 -30.33409 -29.03587 -25.46957 -22.12888 -21.78503 -20.64170 -18.06603 -16.54616 -16.17218 -15.12924 -15.00791 -14.46224 -13.70438 -13.28560 -12.97860 -12.33889 -12.13084 -11.76146 -11.57385 -11.38039 -11.13386 -10.63033 -10.42183 -10.07875 -9.79999 -9.71746 -9.46797 -7.94038 -7.66385 -7.43118 -4.94022 1.57354 1.92203 2.43221 2.75121 2.89822 3.04615 3.10379 3.68379 3.80297 4.10494 4.97666 5.33829 5.66051 5.83522 5.90953 6.32174 6.41959 6.61265 6.78442 7.10726 7.25854 7.47364 7.53989 7.84162 7.98201 8.25767 8.30371 9.53419 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.014669 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.427439 B = 1908.371407 C = 2813.450107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.081 3.919 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.393 4.393 8 H 0.109 0.891 9 C 0.148 3.852 10 C -0.278 4.278 11 C -0.009 4.009 12 C -0.274 4.274 13 C 0.136 3.864 14 O -0.099 6.099 15 N -0.345 5.345 16 C 0.198 3.802 17 Cl 0.020 6.980 18 C -0.288 4.288 19 H 0.296 0.704 20 H 0.112 0.888 21 H 0.110 0.890 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 1.554 -0.183 2.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.419 4.419 8 H 0.127 0.873 9 C 0.142 3.858 10 C -0.297 4.297 11 C -0.029 4.029 12 C -0.295 4.295 13 C 0.082 3.918 14 O -0.109 6.109 15 N -0.098 5.098 16 C 0.000 4.000 17 Cl 0.047 6.953 18 C -0.295 4.295 19 H 0.107 0.893 20 H 0.129 0.871 21 H 0.128 0.872 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.353 0.629 0.481 2.483 hybrid contribution -0.493 1.138 -0.259 1.267 sum 1.860 1.767 0.222 2.575 Atomic orbital electron populations 1.69607 1.08476 1.31709 1.28703 1.26472 0.94930 1.02593 0.90451 0.86164 0.81604 0.78400 0.79571 1.18788 1.21168 1.16039 1.19869 0.92573 0.96840 1.32620 0.87336 1.18030 0.91408 0.88116 0.88225 1.20846 0.95992 1.06404 1.06481 1.20393 0.92759 0.94549 0.95150 1.19026 1.00007 1.02457 1.08045 1.19969 0.90792 0.88685 0.92335 1.89004 1.30589 1.40278 1.51068 1.80002 0.97818 1.17298 1.14673 1.24666 0.89186 0.93262 0.92918 1.98386 1.28446 1.91643 1.76788 1.20946 0.94233 1.06211 1.08133 0.89258 0.87080 0.87210 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.75 13.92 55.56 0.77 -16.98 14 2 C 0.08 1.87 5.42 -17.30 -0.09 1.78 14 3 Si 0.92 18.44 24.53 -169.99 -4.17 14.27 14 4 H -0.26 -5.01 6.72 56.52 0.38 -4.63 14 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 14 6 H -0.24 -5.01 6.85 56.52 0.39 -4.62 14 7 C -0.39 -9.55 9.22 -37.93 -0.35 -9.90 14 8 H 0.11 2.72 6.68 -52.49 -0.35 2.37 14 9 C 0.15 3.54 5.25 -104.79 -0.55 2.99 14 10 C -0.28 -6.13 7.19 -38.79 -0.28 -6.41 14 11 C -0.01 -0.18 9.94 -39.75 -0.40 -0.57 14 12 C -0.27 -5.71 10.02 -39.24 -0.39 -6.10 14 13 C 0.14 3.16 7.48 -38.52 -0.29 2.87 14 14 O -0.10 -2.31 12.07 7.54 0.09 -2.22 14 15 N -0.34 -7.96 12.84 34.08 0.44 -7.53 14 16 C 0.20 4.50 8.09 -15.19 -0.12 4.38 14 17 Cl 0.02 0.39 27.61 -51.86 -1.43 -1.05 14 18 C -0.29 -6.93 6.36 -102.90 -0.65 -7.58 14 19 H 0.30 6.12 8.29 -40.82 -0.34 5.78 14 20 H 0.11 2.34 4.77 -52.49 -0.25 2.09 14 21 H 0.11 1.78 8.06 -52.48 -0.42 1.36 14 22 H 0.11 1.98 8.06 -52.49 -0.42 1.56 14 LS Contribution 216.49 15.07 3.26 3.26 Total: -1.00 -25.21 216.49 -4.78 -29.99 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -0.62 Total: -1.20 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.13 Total: -18.55 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 1.21 Total: -24.51 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.09 Total: -2.22 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.17 Total: 14.27 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.43 Total: -1.05 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -25.21 -4.78 -29.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983636.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.291 kcal (2) G-P(sol) polarization free energy of solvation -25.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds