Wall clock time and date at job start Mon Mar 30 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50696 * 109.47385 * 120.00174 * 2 1 3 5 5 C 1.34673 * 126.59123 * 299.81321 * 4 2 1 6 6 C 1.50699 * 125.98676 * 359.96131 * 5 4 2 7 7 H 1.09002 * 109.47634 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47315 * 240.00006 * 6 5 4 9 9 C 1.50699 * 109.46910 * 120.00251 * 6 5 4 10 10 H 1.08004 * 120.00138 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00028 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00187 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00124 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47003 * 59.99895 * 13 11 9 15 15 H 1.48497 * 109.47456 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47210 * 300.00265 * 13 11 9 17 17 N 1.34122 * 108.02413 * 179.97438 * 5 4 2 18 18 C 1.30503 * 109.25590 * 0.02562 * 17 5 4 19 19 N 1.35042 * 108.69724 * 359.76895 * 18 17 5 20 20 C 1.46500 * 126.39825 * 180.26621 * 19 18 17 21 21 H 1.08994 * 109.47338 * 60.00274 * 1 2 3 22 22 H 1.09001 * 109.46950 * 299.99756 * 1 2 3 23 23 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47410 * 240.00511 * 2 1 3 25 25 H 1.09005 * 109.46907 * 53.93110 * 3 2 1 26 26 H 1.08998 * 109.47225 * 173.93371 * 3 2 1 27 27 H 1.08997 * 109.46935 * 293.93793 * 3 2 1 28 28 H 1.09002 * 109.47239 * 300.00175 * 8 6 5 29 29 H 1.08999 * 109.46935 * 60.00496 * 8 6 5 30 30 H 1.09003 * 109.46839 * 180.02562 * 8 6 5 31 31 H 0.96998 * 120.00230 * 180.02562 * 12 11 9 32 32 H 1.08001 * 125.65024 * 180.02562 * 18 17 5 33 33 H 1.08997 * 109.47855 * 274.52290 * 20 19 18 34 34 H 1.08999 * 109.46993 * 34.52554 * 20 19 18 35 35 H 1.08999 * 109.47408 * 154.52138 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7932 -0.3660 2.5102 6 6 0.9694 0.8084 2.9720 7 1 0.5881 1.3482 2.1051 8 6 1.8410 1.7436 3.8127 9 6 -0.1860 0.3152 3.8042 10 1 -0.3116 -0.7429 3.9808 11 6 -1.0829 1.2148 4.3404 12 7 -0.9304 2.5032 4.1251 13 14 -2.5156 0.6034 5.3715 14 1 -1.9970 -0.1331 6.5520 15 1 -3.3273 1.7606 5.8267 16 1 -3.3618 -0.3034 4.5548 17 7 2.4167 -1.2512 3.3017 18 6 3.0338 -2.1308 2.5610 19 7 2.8156 -1.8325 1.2621 20 6 3.3237 -2.5709 0.1034 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.5907 1.9868 0.8307 26 1 3.1246 1.4445 0.1086 27 1 1.7680 1.9240 -0.9393 28 1 2.2219 1.2037 4.6796 29 1 2.6767 2.1004 3.2107 30 1 1.2450 2.5928 4.1471 31 1 -1.5611 3.1360 4.5026 32 1 3.6183 -2.9623 2.9263 33 1 4.3261 -2.2192 -0.1407 34 1 3.3590 -3.6349 0.3375 35 1 2.6641 -2.4082 -0.7490 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259996991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:55 Heat of formation + Delta-G solvation = 46.483399 kcal Electronic energy + Delta-G solvation = -15878.054044 eV Core-core repulsion = 13490.842128 eV Total energy + Delta-G solvation = -2387.211916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.41036 -35.34224 -34.36316 -32.75802 -30.17463 -27.67923 -26.60619 -26.10848 -24.88473 -22.46476 -21.18994 -19.40529 -18.31280 -16.40317 -15.68223 -15.11683 -14.82602 -14.34302 -13.65267 -13.01758 -12.88519 -12.76968 -12.52719 -12.29920 -12.09386 -11.54892 -11.26600 -10.90212 -10.76457 -10.72310 -10.66461 -10.44325 -10.18399 -9.83139 -9.57047 -8.98149 -8.73550 -8.54415 -8.16219 -7.23290 -5.83056 -3.85445 2.76462 3.36897 3.43294 3.46442 3.51425 4.13732 4.60499 4.92664 5.14860 5.23867 5.30904 5.36994 5.47533 5.48951 5.70327 5.87764 6.12001 6.17494 6.30922 6.46864 6.49871 6.56544 6.79474 6.95821 7.06823 7.17934 7.33567 7.45932 7.73277 7.89955 7.92468 8.16475 8.30735 8.62953 9.08738 9.16054 9.76473 11.22799 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.009691 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.114139 B = 2888.478559 C = 3138.747797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.003 4.003 3 C -0.148 4.148 4 C -0.055 4.055 5 C 0.069 3.931 6 C 0.110 3.890 7 H 0.049 0.951 8 C -0.129 4.129 9 C -0.487 4.487 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.280 1.280 17 N -0.477 5.477 18 C 0.151 3.849 19 N -0.471 5.471 20 C 0.079 3.921 21 H 0.049 0.951 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.002 0.998 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.192 0.808 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -6.260 -9.946 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 C -0.205 4.205 4 C -0.166 4.166 5 C -0.060 4.060 6 C 0.091 3.909 7 H 0.067 0.933 8 C -0.187 4.187 9 C -0.526 4.526 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.205 1.205 17 N -0.195 5.195 18 C -0.130 4.130 19 N -0.157 5.157 20 C -0.065 4.065 21 H 0.068 0.932 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.209 0.791 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.642 -6.163 -9.158 12.882 hybrid contribution -0.577 -0.707 -0.290 0.957 sum 6.065 -6.869 -9.447 13.161 Atomic orbital electron populations 1.21988 0.93690 1.01777 1.03391 1.19315 0.96165 0.94970 0.91820 1.21964 1.00608 0.95444 1.02507 1.20980 1.04494 0.93097 0.97986 1.21384 0.98927 0.98415 0.87287 1.17442 0.90748 0.86964 0.95703 0.93321 1.21714 0.96926 1.01432 0.98613 1.21039 1.07939 0.93076 1.30547 0.92854 1.24908 0.97792 0.94895 0.96565 1.69868 1.36937 1.00788 1.46036 0.86698 0.82555 0.78024 0.80943 1.20400 1.21474 1.20547 1.70222 1.11389 1.04396 1.33507 1.24784 1.05936 1.03092 0.79139 1.45126 1.40451 1.22888 1.07279 1.21819 0.99787 0.96572 0.88320 0.93212 0.89077 0.93505 0.92560 0.90158 0.93440 0.92990 0.94981 0.97940 0.89925 0.93171 0.79143 0.91529 0.90390 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.00 37.16 0.33 -2.32 16 2 C 0.00 -0.05 3.02 -91.77 -0.28 -0.33 16 3 C -0.15 -2.43 8.94 37.16 0.33 -2.10 16 4 C -0.05 -1.08 5.68 -81.60 -0.46 -1.54 16 5 C 0.07 1.63 5.36 -82.85 -0.44 1.19 16 6 C 0.11 2.88 1.58 -92.92 -0.15 2.73 16 7 H 0.05 1.28 3.71 -51.93 -0.19 1.09 16 8 C -0.13 -3.36 8.95 37.16 0.33 -3.03 16 9 C -0.49 -14.01 8.55 -34.44 -0.29 -14.30 16 10 H 0.05 1.60 7.74 -52.48 -0.41 1.19 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 12 N -0.90 -25.89 11.32 55.43 0.63 -25.26 16 13 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.48 -11.17 11.25 -10.87 -0.12 -11.29 16 18 C 0.15 2.76 12.56 -90.37 -1.14 1.62 16 19 N -0.47 -7.90 3.15 -121.37 -0.38 -8.28 16 20 C 0.08 0.85 10.96 59.85 0.66 1.51 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.09 1.94 5.55 -51.93 -0.29 1.65 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.80 6.81 -51.93 -0.35 0.44 16 25 H 0.08 1.55 5.64 -51.93 -0.29 1.25 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 30 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.79 6.99 -51.93 -0.36 0.42 16 LS Contribution 280.48 15.07 4.23 4.23 Total: -1.00 -32.36 280.48 -7.02 -39.38 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.15 Total: -0.96 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.20 Total: -15.01 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.12 Total: -44.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.36 -7.02 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.868 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds