Wall clock time and date at job start Mon Mar 30 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50696 * 109.47385 * 120.00174 * 2 1 3 5 5 C 1.34673 * 126.59123 * 299.81321 * 4 2 1 6 6 C 1.50699 * 125.98676 * 359.96131 * 5 4 2 7 7 H 1.09002 * 109.47634 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47315 * 240.00006 * 6 5 4 9 9 C 1.50699 * 109.46910 * 120.00251 * 6 5 4 10 10 H 1.08004 * 120.00138 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00028 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00187 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00124 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47003 * 59.99895 * 13 11 9 15 15 H 1.48497 * 109.47456 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47210 * 300.00265 * 13 11 9 17 17 N 1.34122 * 108.02413 * 179.97438 * 5 4 2 18 18 C 1.30503 * 109.25590 * 0.02562 * 17 5 4 19 19 N 1.35042 * 108.69724 * 359.76895 * 18 17 5 20 20 C 1.46500 * 126.39825 * 180.26621 * 19 18 17 21 21 H 1.08994 * 109.47338 * 60.00274 * 1 2 3 22 22 H 1.09001 * 109.46950 * 299.99756 * 1 2 3 23 23 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47410 * 240.00511 * 2 1 3 25 25 H 1.09005 * 109.46907 * 53.93110 * 3 2 1 26 26 H 1.08998 * 109.47225 * 173.93371 * 3 2 1 27 27 H 1.08997 * 109.46935 * 293.93793 * 3 2 1 28 28 H 1.09002 * 109.47239 * 300.00175 * 8 6 5 29 29 H 1.08999 * 109.46935 * 60.00496 * 8 6 5 30 30 H 1.09003 * 109.46839 * 180.02562 * 8 6 5 31 31 H 0.96998 * 120.00230 * 180.02562 * 12 11 9 32 32 H 1.08001 * 125.65024 * 180.02562 * 18 17 5 33 33 H 1.08997 * 109.47855 * 274.52290 * 20 19 18 34 34 H 1.08999 * 109.46993 * 34.52554 * 20 19 18 35 35 H 1.08999 * 109.47408 * 154.52138 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7932 -0.3660 2.5102 6 6 0.9694 0.8084 2.9720 7 1 0.5881 1.3482 2.1051 8 6 1.8410 1.7436 3.8127 9 6 -0.1860 0.3152 3.8042 10 1 -0.3116 -0.7429 3.9808 11 6 -1.0829 1.2148 4.3404 12 7 -0.9304 2.5032 4.1251 13 14 -2.5156 0.6034 5.3715 14 1 -1.9970 -0.1331 6.5520 15 1 -3.3273 1.7606 5.8267 16 1 -3.3618 -0.3034 4.5548 17 7 2.4167 -1.2512 3.3017 18 6 3.0338 -2.1308 2.5610 19 7 2.8156 -1.8325 1.2621 20 6 3.3237 -2.5709 0.1034 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.5907 1.9868 0.8307 26 1 3.1246 1.4445 0.1086 27 1 1.7680 1.9240 -0.9393 28 1 2.2219 1.2037 4.6796 29 1 2.6767 2.1004 3.2107 30 1 1.2450 2.5928 4.1471 31 1 -1.5611 3.1360 4.5026 32 1 3.6183 -2.9623 2.9263 33 1 4.3261 -2.2192 -0.1407 34 1 3.3590 -3.6349 0.3375 35 1 2.6641 -2.4082 -0.7490 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259996991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:55 Heat of formation + Delta-G solvation = 27.477732 kcal Electronic energy + Delta-G solvation = -15878.878192 eV Core-core repulsion = 13490.842128 eV Total energy + Delta-G solvation = -2388.036064 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.86310 -36.91863 -35.97178 -34.42386 -32.12700 -29.12300 -27.97454 -27.34868 -27.05095 -24.18010 -22.66332 -20.97984 -19.85134 -18.22636 -17.36785 -16.52152 -16.36795 -16.05996 -15.03882 -14.66675 -14.41008 -14.14738 -13.98973 -13.66941 -13.45325 -13.24445 -12.95781 -12.77660 -12.66799 -12.29052 -12.19820 -12.15648 -12.00255 -11.67899 -11.46971 -10.92285 -10.44242 -10.25042 -10.10099 -8.79967 -8.00193 -6.09969 1.34248 1.40619 1.42867 1.50589 2.16052 2.43346 2.60325 3.25667 3.86018 4.00529 4.06063 4.15418 4.35368 4.49294 4.57003 4.65656 4.78503 4.84197 4.87555 4.96467 5.00385 5.07830 5.18973 5.30690 5.34581 5.44715 5.54256 5.64370 5.76747 6.02067 6.06595 6.23061 6.51269 6.67600 6.94895 7.53660 7.57363 9.03460 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.009691 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.114139 B = 2888.478559 C = 3138.747797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 C -0.143 4.143 4 C -0.045 4.045 5 C 0.019 3.981 6 C 0.114 3.886 7 H 0.043 0.957 8 C -0.114 4.114 9 C -0.503 4.503 10 H 0.030 0.970 11 C 0.015 3.985 12 N -0.916 5.916 13 Si 0.946 3.054 14 H -0.281 1.281 15 H -0.278 1.278 16 H -0.273 1.273 17 N -0.538 5.538 18 C 0.160 3.840 19 N -0.464 5.464 20 C 0.069 3.931 21 H 0.078 0.922 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.097 0.903 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.261 0.739 32 H 0.235 0.765 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 -7.834 -12.064 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 C -0.200 4.200 4 C -0.159 4.159 5 C -0.109 4.109 6 C 0.095 3.905 7 H 0.060 0.940 8 C -0.173 4.173 9 C -0.542 4.542 10 H 0.049 0.951 11 C -0.183 4.183 12 N -0.557 5.557 13 Si 0.772 3.228 14 H -0.207 1.207 15 H -0.203 1.203 16 H -0.199 1.199 17 N -0.257 5.257 18 C -0.121 4.121 19 N -0.149 5.149 20 C -0.072 4.072 21 H 0.097 0.903 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.115 0.885 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.251 0.749 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.403 -7.752 -11.305 15.579 hybrid contribution -0.737 -0.281 0.316 0.849 sum 6.666 -8.033 -10.990 15.157 Atomic orbital electron populations 1.21894 0.94509 1.01416 1.02480 1.19446 0.95396 0.95214 0.92071 1.21895 1.00503 0.95113 1.02525 1.21230 1.03567 0.93526 0.97539 1.21046 1.01369 0.99131 0.89355 1.17214 0.90312 0.88157 0.94776 0.93961 1.21533 0.97060 1.00499 0.98170 1.21205 1.09533 0.91996 1.31441 0.95142 1.25578 1.00020 0.95117 0.97580 1.69969 1.37641 1.01456 1.46588 0.85810 0.79863 0.77858 0.79275 1.20715 1.20283 1.19867 1.70061 1.13591 1.06206 1.35852 1.25497 1.04488 1.02605 0.79521 1.45391 1.39010 1.21908 1.08543 1.22277 1.00909 0.97605 0.86415 0.90324 0.93673 0.93557 0.88525 0.93892 0.93032 0.89969 0.96927 0.96524 0.92098 0.93019 0.74897 0.89331 0.87542 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.00 71.98 0.65 -4.30 16 2 C 0.00 -0.05 3.02 -11.54 -0.03 -0.09 16 3 C -0.14 -4.47 8.94 71.98 0.64 -3.83 16 4 C -0.05 -1.73 5.68 40.95 0.23 -1.49 16 5 C 0.02 0.93 5.36 41.39 0.22 1.15 16 6 C 0.11 6.22 1.58 -12.29 -0.02 6.20 16 7 H 0.04 2.34 3.71 -2.39 -0.01 2.33 16 8 C -0.11 -6.27 8.95 71.98 0.64 -5.63 16 9 C -0.50 -30.17 8.55 25.60 0.22 -29.96 16 10 H 0.03 1.91 7.74 -2.91 -0.02 1.89 16 11 C 0.01 0.86 5.30 84.66 0.45 1.31 16 12 N -0.92 -54.52 11.32 21.45 0.24 -54.28 16 13 Si 0.95 46.56 29.54 68.60 2.03 48.59 16 14 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 17 N -0.54 -25.44 11.25 -188.32 -2.12 -27.55 16 18 C 0.16 5.55 12.56 180.26 2.26 7.81 16 19 N -0.46 -14.20 3.15 -537.89 -1.70 -15.89 16 20 C 0.07 1.15 10.96 127.77 1.40 2.55 16 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.04 1.97 5.55 -2.39 -0.01 1.95 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.10 2.27 6.81 -2.39 -0.02 2.26 16 25 H 0.04 1.67 5.64 -2.38 -0.01 1.66 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.23 5.57 8.06 -2.91 -0.02 5.55 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.34 6.99 -2.39 -0.02 1.32 16 Total: -1.00 -74.10 280.48 6.19 -67.92 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.07 Total: 7.49 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 6.67 Total: -26.26 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -3.57 Total: -97.72 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -74.10 6.19 -67.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.394 kcal (2) G-P(sol) polarization free energy of solvation -74.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds