Wall clock time and date at job start Mon Mar 30 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46848 * 2 1 4 4 C 1.50697 * 109.46879 * 120.00208 * 2 1 3 5 5 C 1.34675 * 126.59236 * 298.61111 * 4 2 1 6 6 C 1.50697 * 125.98671 * 359.97438 * 5 4 2 7 7 H 1.08994 * 109.47090 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46940 * 119.99866 * 6 5 4 9 9 C 1.50699 * 109.47169 * 239.99737 * 6 5 4 10 10 H 1.08007 * 119.99705 * 354.59112 * 9 6 5 11 11 C 1.37873 * 120.00344 * 174.59047 * 9 6 5 12 12 N 1.31509 * 120.00527 * 159.50734 * 11 9 6 13 13 Si 1.86805 * 119.99646 * 339.51000 * 11 9 6 14 14 H 1.48506 * 109.47078 * 179.97438 * 13 11 9 15 15 H 1.48499 * 109.47242 * 300.00012 * 13 11 9 16 16 H 1.48502 * 109.47084 * 59.99827 * 13 11 9 17 17 N 1.34129 * 108.01868 * 180.24994 * 5 4 2 18 18 C 1.30504 * 109.25701 * 359.62378 * 17 5 4 19 19 N 1.35037 * 108.70032 * 0.37904 * 18 17 5 20 20 C 1.46503 * 126.39878 * 179.76778 * 19 18 17 21 21 H 1.08997 * 109.46772 * 299.99748 * 1 2 3 22 22 H 1.08994 * 109.47062 * 60.00107 * 1 2 3 23 23 H 1.09006 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47093 * 240.00057 * 2 1 3 25 25 H 1.09003 * 109.46961 * 184.98789 * 3 2 1 26 26 H 1.08998 * 109.47603 * 304.98614 * 3 2 1 27 27 H 1.09001 * 109.47410 * 64.99031 * 3 2 1 28 28 H 1.08997 * 109.47095 * 174.11227 * 8 6 5 29 29 H 1.09003 * 109.47560 * 294.11590 * 8 6 5 30 30 H 1.09003 * 109.47469 * 54.11335 * 8 6 5 31 31 H 0.97003 * 119.99969 * 354.93708 * 12 11 9 32 32 H 1.08002 * 125.64553 * 180.14656 * 18 17 5 33 33 H 1.09000 * 109.46903 * 274.41671 * 20 19 18 34 34 H 1.08996 * 109.46848 * 34.42265 * 20 19 18 35 35 H 1.09008 * 109.47300 * 154.41741 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.8117 -0.3532 2.5100 6 6 1.0126 0.8382 2.9716 7 1 0.6320 1.3782 2.1047 8 6 -0.1604 0.3634 3.8315 9 6 1.8947 1.7503 3.7847 10 1 2.9047 1.4519 4.0245 11 6 1.4125 2.9655 4.2225 12 7 1.9885 3.5753 5.2353 13 14 -0.0591 3.7458 3.3769 14 1 -0.3781 5.0396 4.0324 15 1 0.2595 3.9808 1.9456 16 1 -1.2290 2.8370 3.4808 17 7 2.4330 -1.2401 3.3015 18 6 3.0235 -2.1381 2.5611 19 7 2.8010 -1.8427 1.2623 20 6 3.2909 -2.5937 0.1037 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1263 1.4438 -0.0894 26 1 1.6056 1.9815 -0.8419 27 1 1.7515 1.9299 0.9313 28 1 -0.6765 1.2270 4.2508 29 1 -0.8533 -0.2104 3.2160 30 1 0.2129 -0.2648 4.6403 31 1 2.7050 3.1376 5.7211 32 1 3.5983 -2.9762 2.9266 33 1 4.2959 -2.2562 -0.1496 34 1 3.3141 -3.6568 0.3433 35 1 2.6270 -2.4269 -0.7446 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259996996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:57 Heat of formation + Delta-G solvation = 46.909049 kcal Electronic energy + Delta-G solvation = -15966.327095 eV Core-core repulsion = 13579.133636 eV Total energy + Delta-G solvation = -2387.193459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53548 -35.53046 -34.48915 -32.78164 -30.75858 -27.85558 -26.75206 -26.30602 -24.49978 -22.49152 -21.25253 -19.46556 -18.34262 -17.19382 -16.09551 -15.26566 -14.96657 -13.82592 -13.75695 -13.19648 -13.02234 -12.88985 -12.83588 -12.52265 -12.27189 -11.74530 -11.64010 -11.06461 -10.99372 -10.80882 -10.73455 -10.49868 -10.21802 -9.68770 -9.55838 -8.97174 -8.88368 -8.69017 -8.03443 -7.40333 -6.24792 -3.83241 2.65438 3.27079 3.49071 3.49735 3.68909 4.02214 4.63604 4.84658 5.03031 5.15488 5.21051 5.26515 5.39431 5.41058 5.55539 5.75035 5.97230 6.04697 6.15275 6.25866 6.30718 6.37664 6.59264 6.66298 6.78849 6.94564 6.98760 7.04683 7.31300 7.61199 7.62601 7.92224 8.34729 8.60067 8.95965 9.14887 9.80932 11.10584 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.010983 C = 0.009487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.574149 B = 2548.777051 C = 2950.718193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 C -0.155 4.155 4 C -0.053 4.053 5 C 0.075 3.925 6 C 0.086 3.914 7 H 0.037 0.963 8 C -0.139 4.139 9 C -0.576 4.576 10 H 0.057 0.943 11 C 0.031 3.969 12 N -0.909 5.909 13 Si 1.030 2.970 14 H -0.287 1.287 15 H -0.282 1.282 16 H -0.274 1.274 17 N -0.475 5.475 18 C 0.155 3.845 19 N -0.470 5.470 20 C 0.078 3.922 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.194 0.806 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -10.282 -13.005 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 C -0.212 4.212 4 C -0.164 4.164 5 C -0.054 4.054 6 C 0.066 3.934 7 H 0.055 0.945 8 C -0.197 4.197 9 C -0.614 4.614 10 H 0.075 0.925 11 C -0.173 4.173 12 N -0.543 5.543 13 Si 0.858 3.142 14 H -0.213 1.213 15 H -0.208 1.208 16 H -0.201 1.201 17 N -0.193 5.193 18 C -0.126 4.126 19 N -0.156 5.156 20 C -0.065 4.065 21 H 0.091 0.909 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.210 0.790 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.761 -8.982 -12.269 15.307 hybrid contribution 1.317 -1.713 -0.838 2.317 sum -0.444 -10.695 -13.107 16.923 Atomic orbital electron populations 1.21966 0.94396 1.01544 1.02707 1.19337 0.95554 0.95534 0.92061 1.22036 1.00608 0.94780 1.03787 1.20935 1.05078 0.92601 0.97822 1.20894 1.00013 0.97186 0.87333 1.17698 0.92017 0.88679 0.94971 0.94510 1.22133 0.97671 1.00026 0.99896 1.21864 1.00383 1.03446 1.35721 0.92515 1.25646 1.01615 0.94900 0.95169 1.70811 1.24816 1.42037 1.16681 0.84284 0.76844 0.76579 0.76460 1.21272 1.20831 1.20067 1.70203 1.11723 1.03950 1.33473 1.24802 1.06043 1.02668 0.79076 1.45126 1.40985 1.22113 1.07364 1.21843 1.00177 0.96351 0.88174 0.90867 0.92587 0.93242 0.92180 0.93191 0.92907 0.89305 0.93145 0.96431 0.93213 0.92250 0.78973 0.91378 0.90278 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.01 37.16 0.33 -1.91 16 2 C -0.01 -0.08 3.02 -91.77 -0.28 -0.36 16 3 C -0.15 -2.66 9.00 37.15 0.33 -2.33 16 4 C -0.05 -1.02 5.68 -81.60 -0.46 -1.49 16 5 C 0.07 1.74 5.36 -82.85 -0.44 1.30 16 6 C 0.09 2.15 0.96 -92.93 -0.09 2.06 16 7 H 0.04 0.88 2.50 -51.93 -0.13 0.75 16 8 C -0.14 -3.35 8.87 37.16 0.33 -3.02 16 9 C -0.58 -16.90 8.77 -34.44 -0.30 -17.21 16 10 H 0.06 1.87 7.99 -52.48 -0.42 1.45 16 11 C 0.03 0.91 5.25 -17.82 -0.09 0.82 16 12 N -0.91 -28.81 13.70 55.43 0.76 -28.05 16 13 Si 1.03 25.38 26.37 -169.99 -4.48 20.90 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.27 5.92 56.52 0.33 -5.93 16 17 N -0.48 -11.07 11.25 -10.87 -0.12 -11.19 16 18 C 0.15 2.79 12.56 -90.38 -1.14 1.66 16 19 N -0.47 -7.69 3.15 -121.36 -0.38 -8.08 16 20 C 0.08 0.81 10.95 59.85 0.66 1.47 16 21 H 0.07 1.27 5.68 -51.93 -0.30 0.97 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.81 6.82 -51.93 -0.35 0.45 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.86 5.30 -51.93 -0.28 1.58 16 28 H 0.05 1.23 5.15 -51.93 -0.27 0.96 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.27 8.56 8.73 -40.82 -0.36 8.21 16 32 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.73 7.01 -51.92 -0.36 0.37 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -34.25 276.40 -6.34 -40.59 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.13 Total: 0.67 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -1.15 Total: -19.00 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.25 Total: -47.32 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.48 Total: 20.90 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.25 -6.34 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.501 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds