Wall clock time and date at job start Mon Mar 30 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46848 * 2 1 4 4 C 1.50697 * 109.46879 * 120.00208 * 2 1 3 5 5 C 1.34675 * 126.59236 * 298.61111 * 4 2 1 6 6 C 1.50697 * 125.98671 * 359.97438 * 5 4 2 7 7 H 1.08994 * 109.47090 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46940 * 119.99866 * 6 5 4 9 9 C 1.50699 * 109.47169 * 239.99737 * 6 5 4 10 10 H 1.08007 * 119.99705 * 354.59112 * 9 6 5 11 11 C 1.37873 * 120.00344 * 174.59047 * 9 6 5 12 12 N 1.31509 * 120.00527 * 159.50734 * 11 9 6 13 13 Si 1.86805 * 119.99646 * 339.51000 * 11 9 6 14 14 H 1.48506 * 109.47078 * 179.97438 * 13 11 9 15 15 H 1.48499 * 109.47242 * 300.00012 * 13 11 9 16 16 H 1.48502 * 109.47084 * 59.99827 * 13 11 9 17 17 N 1.34129 * 108.01868 * 180.24994 * 5 4 2 18 18 C 1.30504 * 109.25701 * 359.62378 * 17 5 4 19 19 N 1.35037 * 108.70032 * 0.37904 * 18 17 5 20 20 C 1.46503 * 126.39878 * 179.76778 * 19 18 17 21 21 H 1.08997 * 109.46772 * 299.99748 * 1 2 3 22 22 H 1.08994 * 109.47062 * 60.00107 * 1 2 3 23 23 H 1.09006 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47093 * 240.00057 * 2 1 3 25 25 H 1.09003 * 109.46961 * 184.98789 * 3 2 1 26 26 H 1.08998 * 109.47603 * 304.98614 * 3 2 1 27 27 H 1.09001 * 109.47410 * 64.99031 * 3 2 1 28 28 H 1.08997 * 109.47095 * 174.11227 * 8 6 5 29 29 H 1.09003 * 109.47560 * 294.11590 * 8 6 5 30 30 H 1.09003 * 109.47469 * 54.11335 * 8 6 5 31 31 H 0.97003 * 119.99969 * 354.93708 * 12 11 9 32 32 H 1.08002 * 125.64553 * 180.14656 * 18 17 5 33 33 H 1.09000 * 109.46903 * 274.41671 * 20 19 18 34 34 H 1.08996 * 109.46848 * 34.42265 * 20 19 18 35 35 H 1.09008 * 109.47300 * 154.41741 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.8117 -0.3532 2.5100 6 6 1.0126 0.8382 2.9716 7 1 0.6320 1.3782 2.1047 8 6 -0.1604 0.3634 3.8315 9 6 1.8947 1.7503 3.7847 10 1 2.9047 1.4519 4.0245 11 6 1.4125 2.9655 4.2225 12 7 1.9885 3.5753 5.2353 13 14 -0.0591 3.7458 3.3769 14 1 -0.3781 5.0396 4.0324 15 1 0.2595 3.9808 1.9456 16 1 -1.2290 2.8370 3.4808 17 7 2.4330 -1.2401 3.3015 18 6 3.0235 -2.1381 2.5611 19 7 2.8010 -1.8427 1.2623 20 6 3.2909 -2.5937 0.1037 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1263 1.4438 -0.0894 26 1 1.6056 1.9815 -0.8419 27 1 1.7515 1.9299 0.9313 28 1 -0.6765 1.2270 4.2508 29 1 -0.8533 -0.2104 3.2160 30 1 0.2129 -0.2648 4.6403 31 1 2.7050 3.1376 5.7211 32 1 3.5983 -2.9762 2.9266 33 1 4.2959 -2.2562 -0.1496 34 1 3.3141 -3.6568 0.3433 35 1 2.6270 -2.4269 -0.7446 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259996996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:57 Heat of formation + Delta-G solvation = 24.356114 kcal Electronic energy + Delta-G solvation = -15967.305064 eV Core-core repulsion = 13579.133636 eV Total energy + Delta-G solvation = -2388.171427 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.95760 -37.05684 -36.03471 -34.51583 -32.71066 -29.25952 -27.99485 -27.47453 -26.63244 -24.14129 -22.68915 -21.03813 -19.88430 -19.32291 -17.43629 -16.51322 -16.40798 -15.64158 -15.09098 -14.93760 -14.50617 -14.41160 -14.10340 -13.89590 -13.58990 -13.44691 -13.04198 -12.75369 -12.55018 -12.32430 -12.25238 -12.03579 -11.87118 -11.57664 -11.36324 -10.96393 -10.59215 -10.24488 -10.20627 -8.99627 -8.55627 -6.21961 1.26729 1.48368 1.56946 1.75425 2.09333 2.44497 2.57081 3.11394 3.80347 3.93170 4.00661 4.10371 4.31622 4.43523 4.49004 4.53769 4.57974 4.74396 4.81614 4.86680 4.93991 4.98705 5.03972 5.12484 5.19882 5.27976 5.39860 5.49181 5.69450 5.79805 6.00511 6.10283 6.28967 6.57406 6.68528 7.46706 7.53358 8.69883 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.010983 C = 0.009487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.574149 B = 2548.777051 C = 2950.718193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.005 4.005 3 C -0.154 4.154 4 C -0.039 4.039 5 C 0.019 3.981 6 C 0.090 3.910 7 H 0.056 0.944 8 C -0.133 4.133 9 C -0.573 4.573 10 H -0.002 1.002 11 C -0.023 4.023 12 N -0.943 5.943 13 Si 1.071 2.929 14 H -0.291 1.291 15 H -0.250 1.250 16 H -0.243 1.243 17 N -0.542 5.542 18 C 0.159 3.841 19 N -0.463 5.463 20 C 0.068 3.932 21 H 0.045 0.955 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.246 0.754 32 H 0.233 0.767 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -11.832 -16.827 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 C -0.211 4.211 4 C -0.153 4.153 5 C -0.109 4.109 6 C 0.070 3.930 7 H 0.073 0.927 8 C -0.190 4.190 9 C -0.611 4.611 10 H 0.017 0.983 11 C -0.220 4.220 12 N -0.579 5.579 13 Si 0.891 3.109 14 H -0.217 1.217 15 H -0.174 1.174 16 H -0.168 1.168 17 N -0.261 5.261 18 C -0.122 4.122 19 N -0.147 5.147 20 C -0.073 4.073 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.977 -10.583 -16.129 19.519 hybrid contribution 1.861 -1.364 0.334 2.331 sum -1.116 -11.947 -15.795 19.836 Atomic orbital electron populations 1.21953 0.93308 1.02308 1.02862 1.19522 0.96440 0.94603 0.91936 1.22003 1.00528 0.95787 1.02826 1.21293 1.03693 0.92818 0.97493 1.20724 1.02778 0.98016 0.89423 1.17540 0.91582 0.89127 0.94707 0.92673 1.22013 0.97953 0.99587 0.99488 1.21961 0.98626 1.04623 1.35904 0.98332 1.27266 1.04264 0.95629 0.94801 1.70965 1.25695 1.42585 1.18697 0.83809 0.74226 0.75928 0.76942 1.21703 1.17417 1.16759 1.70049 1.14015 1.05933 1.36106 1.25452 1.04816 1.02299 0.79649 1.45413 1.39435 1.21332 1.08479 1.22305 1.01078 0.97411 0.86465 0.93576 0.89479 0.92233 0.88316 0.93812 0.89631 0.93534 0.93861 0.93349 0.95701 0.94516 0.75084 0.89985 0.87243 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.01 71.98 0.65 -3.16 16 2 C -0.01 -0.15 3.02 -11.54 -0.03 -0.19 16 3 C -0.15 -4.90 9.00 71.98 0.65 -4.25 16 4 C -0.04 -1.43 5.68 40.95 0.23 -1.19 16 5 C 0.02 0.89 5.36 41.39 0.22 1.11 16 6 C 0.09 4.56 0.96 -12.29 -0.01 4.55 16 7 H 0.06 2.60 2.50 -2.39 -0.01 2.59 16 8 C -0.13 -6.43 8.87 71.98 0.64 -5.79 16 9 C -0.57 -35.43 8.77 25.60 0.22 -35.20 16 10 H 0.00 -0.13 7.99 -2.91 -0.02 -0.15 16 11 C -0.02 -1.43 5.25 84.65 0.44 -0.99 16 12 N -0.94 -62.94 13.70 21.44 0.29 -62.65 16 13 Si 1.07 51.09 26.37 68.60 1.81 52.90 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.24 -10.35 5.92 99.48 0.59 -9.76 16 17 N -0.54 -25.78 11.25 -188.31 -2.12 -27.90 16 18 C 0.16 5.54 12.56 180.26 2.26 7.81 16 19 N -0.46 -13.80 3.15 -537.87 -1.70 -15.49 16 20 C 0.07 1.08 10.95 127.77 1.40 2.48 16 21 H 0.05 1.45 5.68 -2.39 -0.01 1.44 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.10 2.07 6.82 -2.38 -0.02 2.06 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.89 5.30 -2.39 -0.01 1.87 16 28 H 0.04 2.09 5.15 -2.39 -0.01 2.08 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.25 16.97 8.73 -92.71 -0.81 16.17 16 32 H 0.23 5.68 8.06 -2.91 -0.02 5.65 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.24 7.01 -2.38 -0.02 1.22 16 Total: -1.00 -81.83 276.40 5.88 -75.95 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.91 Total: 12.03 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 6.68 Total: -34.83 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.52 Total: -106.04 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.81 Total: 52.90 kcal Total: -81.83 5.88 -75.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.307 kcal (2) G-P(sol) polarization free energy of solvation -81.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds