Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47145 * 2 1 4 4 C 1.50699 * 109.46940 * 120.00283 * 2 1 3 5 5 C 1.34669 * 126.59169 * 324.95238 * 4 2 1 6 6 N 1.34126 * 108.02283 * 179.81819 * 5 4 2 7 7 C 1.30499 * 109.25637 * 0.36973 * 6 5 4 8 8 C 1.50697 * 125.65319 * 179.89139 * 7 6 5 9 9 C 1.52997 * 109.47466 * 269.69476 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 N 1.35046 * 108.69704 * 359.62951 * 7 6 5 19 19 C 1.46501 * 126.39717 * 180.20504 * 18 7 6 20 20 H 1.09001 * 109.46810 * 299.99905 * 1 2 3 21 21 H 1.09000 * 109.47170 * 59.99858 * 1 2 3 22 22 H 1.08999 * 109.47390 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46687 * 239.99558 * 2 1 3 24 24 H 1.09003 * 109.46789 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47488 * 299.99835 * 3 2 1 26 26 H 1.09001 * 109.47189 * 60.00327 * 3 2 1 27 27 H 1.07999 * 125.98986 * 0.07258 * 5 4 2 28 28 H 1.09002 * 109.47120 * 149.69229 * 8 7 6 29 29 H 1.08998 * 109.46862 * 29.70031 * 8 7 6 30 30 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.46897 * 90.02669 * 19 18 7 34 34 H 1.09000 * 109.47387 * 210.02736 * 19 18 7 35 35 H 1.08997 * 109.47038 * 330.02442 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4653 -0.6988 2.4519 6 7 2.2166 -1.4556 3.2654 7 6 3.2319 -1.9295 2.5965 8 6 4.3103 -2.8231 3.1528 9 6 5.4563 -1.9647 3.6920 10 6 6.5343 -2.8584 4.2489 11 1 6.4144 -3.9313 4.2207 12 6 7.6744 -2.3063 4.7935 13 7 7.8207 -0.9998 4.8274 14 14 9.0110 -3.4141 5.4832 15 1 9.5211 -4.3027 4.4081 16 1 10.1232 -2.5809 6.0066 17 1 8.4511 -4.2394 6.5835 18 7 3.1531 -1.4910 1.3216 19 6 4.0919 -1.7939 0.2385 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 0.5616 -0.1754 2.7270 28 1 4.6849 -3.4751 2.3637 29 1 3.8992 -3.4291 3.9602 30 1 5.0817 -1.3127 4.4812 31 1 5.8673 -1.3587 2.8846 32 1 8.6226 -0.6114 5.2109 33 1 3.7689 -2.6963 -0.2806 34 1 4.1179 -0.9605 -0.4635 35 1 5.0875 -1.9502 0.6538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260000531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = 30.091296 kcal Electronic energy + Delta-G solvation = -15058.483127 eV Core-core repulsion = 12670.560396 eV Total energy + Delta-G solvation = -2387.922731 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.70654 -35.62072 -33.87961 -33.42305 -31.41066 -27.85715 -27.18828 -26.63625 -24.88650 -22.51214 -21.46458 -19.30899 -18.96487 -16.63877 -16.17960 -15.33153 -14.66655 -14.45058 -14.28221 -13.51796 -13.04587 -12.99449 -12.79005 -12.47985 -12.33686 -12.24052 -12.01852 -11.47918 -11.22575 -11.01459 -10.99133 -10.91889 -10.63822 -9.94519 -9.65628 -9.34476 -9.16383 -9.08065 -8.36192 -7.61971 -6.00766 -4.04611 2.48913 3.21920 3.33266 3.37978 3.40205 3.70474 4.45069 4.70259 4.86027 5.05104 5.11625 5.21499 5.34808 5.36423 5.40905 5.56276 5.66152 5.69193 5.77840 5.79194 5.92482 5.99162 6.14879 6.21962 6.44742 6.57703 6.87541 6.88130 7.25198 7.62829 7.70979 7.79214 7.98329 8.36622 8.71064 9.01900 9.59512 11.10308 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.051402 B = 0.005705 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.592446 B = 4906.505041 C = 4997.207703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.013 4.013 3 C -0.143 4.143 4 C -0.044 4.044 5 C -0.025 4.025 6 N -0.499 5.499 7 C 0.237 3.763 8 C -0.034 4.034 9 C 0.033 3.967 10 C -0.524 4.524 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.457 5.457 19 C 0.071 3.929 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.159 0.841 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.012 0.988 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 1.559 -12.124 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.158 4.158 5 C -0.173 4.173 6 N -0.217 5.217 7 C -0.025 4.025 8 C -0.073 4.073 9 C -0.006 4.006 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.139 5.139 19 C -0.072 4.072 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.177 0.823 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.650 1.520 -11.356 15.643 hybrid contribution 1.006 -0.275 -0.484 1.150 sum -9.644 1.245 -11.841 15.322 Atomic orbital electron populations 1.21773 0.93806 1.02077 1.01948 1.19426 0.95887 0.94966 0.93038 1.21846 1.01206 0.95090 1.01900 1.20986 0.92390 1.03703 0.98685 1.21901 1.01868 1.04022 0.89543 1.70286 1.05218 1.14137 1.32066 1.23920 0.97835 1.00598 0.80137 1.20354 0.91824 0.95605 0.99521 1.19042 0.90518 0.94761 0.96238 1.21154 1.02428 0.93043 1.39569 0.92457 1.25012 0.98383 0.94967 0.95911 1.69969 1.27925 1.09957 1.45372 0.86631 0.81279 0.80463 0.79461 1.20251 1.21300 1.20108 1.45151 1.20231 1.38006 1.10514 1.22003 0.94089 1.01654 0.89484 0.92037 0.92384 0.92486 0.91245 0.92792 0.92443 0.92075 0.82325 0.91834 0.89935 0.95731 0.96952 0.92886 0.91125 0.90327 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.79 37.16 0.33 -1.01 16 2 C -0.01 -0.16 3.00 -91.77 -0.28 -0.43 16 3 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 4 C -0.04 -0.70 5.87 -81.60 -0.48 -1.18 16 5 C -0.02 -0.45 11.06 -17.81 -0.20 -0.64 16 6 N -0.50 -10.78 11.25 -10.82 -0.12 -10.90 16 7 C 0.24 4.93 7.16 -155.41 -1.11 3.82 16 8 C -0.03 -0.73 5.25 -27.89 -0.15 -0.88 16 9 C 0.03 0.86 4.95 -27.88 -0.14 0.72 16 10 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 N -0.46 -7.94 3.15 -116.68 -0.37 -8.31 16 19 C 0.07 0.95 10.43 59.85 0.62 1.57 16 20 H 0.06 0.59 7.32 -51.93 -0.38 0.21 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.74 7.64 -51.93 -0.40 0.34 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.16 2.39 7.40 -52.49 -0.39 2.00 16 28 H 0.06 1.24 7.71 -51.93 -0.40 0.84 16 29 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 35 H 0.10 1.41 7.66 -51.93 -0.40 1.01 16 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -32.58 293.53 -7.53 -40.10 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.71 Total: -2.85 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.47 Total: -12.69 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.25 Total: -45.50 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.58 -7.53 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.192 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds