Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47145 * 2 1 4 4 C 1.50699 * 109.46940 * 120.00283 * 2 1 3 5 5 C 1.34669 * 126.59169 * 324.95238 * 4 2 1 6 6 N 1.34126 * 108.02283 * 179.81819 * 5 4 2 7 7 C 1.30499 * 109.25637 * 0.36973 * 6 5 4 8 8 C 1.50697 * 125.65319 * 179.89139 * 7 6 5 9 9 C 1.52997 * 109.47466 * 269.69476 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 N 1.35046 * 108.69704 * 359.62951 * 7 6 5 19 19 C 1.46501 * 126.39717 * 180.20504 * 18 7 6 20 20 H 1.09001 * 109.46810 * 299.99905 * 1 2 3 21 21 H 1.09000 * 109.47170 * 59.99858 * 1 2 3 22 22 H 1.08999 * 109.47390 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46687 * 239.99558 * 2 1 3 24 24 H 1.09003 * 109.46789 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47488 * 299.99835 * 3 2 1 26 26 H 1.09001 * 109.47189 * 60.00327 * 3 2 1 27 27 H 1.07999 * 125.98986 * 0.07258 * 5 4 2 28 28 H 1.09002 * 109.47120 * 149.69229 * 8 7 6 29 29 H 1.08998 * 109.46862 * 29.70031 * 8 7 6 30 30 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.46897 * 90.02669 * 19 18 7 34 34 H 1.09000 * 109.47387 * 210.02736 * 19 18 7 35 35 H 1.08997 * 109.47038 * 330.02442 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4653 -0.6988 2.4519 6 7 2.2166 -1.4556 3.2654 7 6 3.2319 -1.9295 2.5965 8 6 4.3103 -2.8231 3.1528 9 6 5.4563 -1.9647 3.6920 10 6 6.5343 -2.8584 4.2489 11 1 6.4144 -3.9313 4.2207 12 6 7.6744 -2.3063 4.7935 13 7 7.8207 -0.9998 4.8274 14 14 9.0110 -3.4141 5.4832 15 1 9.5211 -4.3027 4.4081 16 1 10.1232 -2.5809 6.0066 17 1 8.4511 -4.2394 6.5835 18 7 3.1531 -1.4910 1.3216 19 6 4.0919 -1.7939 0.2385 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 0.5616 -0.1754 2.7270 28 1 4.6849 -3.4751 2.3637 29 1 3.8992 -3.4291 3.9602 30 1 5.0817 -1.3127 4.4812 31 1 5.8673 -1.3587 2.8846 32 1 8.6226 -0.6114 5.2109 33 1 3.7689 -2.6963 -0.2806 34 1 4.1179 -0.9605 -0.4635 35 1 5.0875 -1.9502 0.6538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260000531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = 10.895530 kcal Electronic energy + Delta-G solvation = -15059.315518 eV Core-core repulsion = 12670.560396 eV Total energy + Delta-G solvation = -2388.755122 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.09770 -36.73404 -35.74415 -34.85074 -33.34730 -29.45665 -28.01491 -27.93685 -26.68317 -23.70029 -23.38013 -20.74011 -20.23806 -18.58443 -17.66679 -16.77141 -16.37465 -15.89504 -15.37581 -14.73629 -14.62949 -14.49374 -14.07189 -13.94462 -13.70962 -13.53020 -13.07601 -12.94416 -12.80957 -12.53901 -12.32082 -12.08474 -11.91902 -11.87826 -11.64771 -11.30946 -10.78339 -10.57137 -10.46633 -9.03286 -8.20348 -6.33571 1.11998 1.41847 1.45744 1.53445 1.94455 2.21285 2.42389 3.12908 3.63734 3.73257 3.89873 4.01779 4.24277 4.27339 4.36753 4.51540 4.53612 4.64078 4.72008 4.78061 4.84376 4.93229 4.97643 5.01639 5.16575 5.31592 5.39210 5.44317 5.58312 5.62241 5.78538 5.93193 6.16051 6.33059 6.82553 7.25849 7.36418 8.91437 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.051402 B = 0.005705 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.592446 B = 4906.505041 C = 4997.207703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 C -0.140 4.140 4 C -0.021 4.021 5 C -0.056 4.056 6 N -0.536 5.536 7 C 0.199 3.801 8 C -0.017 4.017 9 C 0.045 3.955 10 C -0.543 4.543 11 H 0.069 0.931 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.261 1.261 16 H -0.285 1.285 17 H -0.268 1.268 18 N -0.455 5.455 19 C 0.063 3.937 20 H 0.059 0.941 21 H 0.084 0.916 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.179 0.821 28 H 0.085 0.915 29 H 0.075 0.925 30 H -0.021 1.021 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 0.967 -14.079 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.136 4.136 5 C -0.203 4.203 6 N -0.255 5.255 7 C -0.063 4.063 8 C -0.056 4.056 9 C 0.007 3.993 10 C -0.581 4.581 11 H 0.087 0.913 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.185 1.185 16 H -0.210 1.210 17 H -0.193 1.193 18 N -0.137 5.137 19 C -0.078 4.078 20 H 0.078 0.922 21 H 0.103 0.897 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.196 0.804 28 H 0.104 0.896 29 H 0.093 0.907 30 H -0.003 1.003 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.957 0.909 -13.332 17.281 hybrid contribution 1.030 -0.006 0.065 1.032 sum -9.927 0.904 -13.267 16.595 Atomic orbital electron populations 1.21767 0.92020 1.02265 1.03218 1.19662 0.97279 0.94897 0.91366 1.21832 1.00279 0.94692 1.02987 1.21753 0.90741 1.01419 0.99689 1.22346 1.02933 1.04834 0.90190 1.70160 1.06253 1.15152 1.33976 1.23530 0.98286 1.02546 0.81924 1.19993 0.90607 0.95103 0.99881 1.18803 0.91935 0.94388 0.94143 1.21602 1.03007 0.93853 1.39623 0.91254 1.26022 1.01144 0.96465 0.96081 1.70124 1.28835 1.12167 1.46387 0.85430 0.77730 0.78395 0.79061 1.18519 1.21049 1.19274 1.45374 1.20903 1.37251 1.10201 1.22288 0.92580 1.04184 0.88770 0.92236 0.89715 0.92862 0.89337 0.94221 0.89387 0.93021 0.80373 0.89630 0.90671 1.00273 0.98990 0.92758 0.88246 0.87661 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.79 71.98 0.63 -1.54 16 2 C -0.01 -0.25 3.00 -11.54 -0.03 -0.28 16 3 C -0.14 -2.69 9.18 71.98 0.66 -2.03 16 4 C -0.02 -0.64 5.87 40.95 0.24 -0.40 16 5 C -0.06 -1.99 11.06 83.52 0.92 -1.07 16 6 N -0.54 -23.84 11.25 -188.13 -2.12 -25.95 16 7 C 0.20 8.46 7.16 138.13 0.99 9.45 16 8 C -0.02 -0.74 5.25 29.85 0.16 -0.59 16 9 C 0.05 2.51 4.95 29.85 0.15 2.66 16 10 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 11 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 12 C 0.00 0.04 5.46 84.66 0.46 0.51 16 13 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 14 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 15 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 N -0.46 -15.54 3.15 -523.05 -1.65 -17.19 16 19 C 0.06 1.59 10.43 127.77 1.33 2.92 16 20 H 0.06 0.99 7.32 -2.39 -0.02 0.97 16 21 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.09 1.51 7.64 -2.39 -0.02 1.49 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.18 5.33 7.40 -2.91 -0.02 5.31 16 28 H 0.09 3.34 7.71 -2.39 -0.02 3.32 16 29 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 30 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.10 2.07 7.68 -2.39 -0.02 2.05 16 35 H 0.08 2.30 7.66 -2.39 -0.02 2.28 16 Total: -1.00 -72.74 293.53 5.33 -67.41 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.04 Total: 8.43 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 5.74 Total: -21.19 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -3.48 Total: -100.86 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.74 5.33 -67.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.303 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds