Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36884 * 126.39412 * 2 1 4 4 C 1.50701 * 126.59528 * 359.96891 * 3 2 1 5 5 C 1.50702 * 109.46875 * 264.99875 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99689 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99961 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47237 * 60.00497 * 9 7 5 11 11 H 1.48496 * 109.47102 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47075 * 300.00353 * 9 7 5 13 13 C 1.34673 * 106.81424 * 180.02562 * 3 2 1 14 14 N 1.34130 * 108.02133 * 0.02562 * 13 3 2 15 15 C 1.30500 * 109.25476 * 359.72811 * 14 13 3 16 16 C 1.50703 * 125.64992 * 180.29474 * 15 14 13 17 17 C 1.52997 * 109.46686 * 233.67313 * 16 15 14 18 18 C 1.52997 * 109.46804 * 353.67080 * 16 15 14 19 19 C 1.52999 * 109.47158 * 113.67226 * 16 15 14 20 20 H 1.08995 * 109.47040 * 84.96832 * 1 2 3 21 21 H 1.09003 * 109.46993 * 324.97242 * 1 2 3 22 22 H 1.08997 * 109.46968 * 204.97196 * 1 2 3 23 23 H 1.09001 * 109.46736 * 24.99619 * 4 3 2 24 24 H 1.09000 * 109.46968 * 144.99755 * 4 3 2 25 25 H 0.96998 * 119.99915 * 179.97438 * 8 7 5 26 26 H 1.08000 * 125.99087 * 180.02562 * 13 3 2 27 27 H 1.09003 * 109.47315 * 60.00481 * 17 16 15 28 28 H 1.09008 * 109.46806 * 179.97438 * 17 16 15 29 29 H 1.08997 * 109.47478 * 299.99651 * 17 16 15 30 30 H 1.09000 * 109.47436 * 60.00651 * 18 16 15 31 31 H 1.09001 * 109.46899 * 179.97438 * 18 16 15 32 32 H 1.08994 * 109.47645 * 300.00472 * 18 16 15 33 33 H 1.09003 * 109.46638 * 66.28077 * 19 16 15 34 34 H 1.08997 * 109.46871 * 186.28254 * 19 16 15 35 35 H 1.08996 * 109.47168 * 306.28041 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 1.8363 2.5429 -0.0007 5 6 1.8084 3.0590 -1.4163 6 1 2.0829 2.4087 -2.2336 7 6 1.4325 4.3615 -1.6679 8 7 1.0987 5.1535 -0.6725 9 14 1.3986 5.0015 -3.4225 10 1 0.4479 4.1921 -4.2264 11 1 0.9641 6.4214 -3.4232 12 1 2.7574 4.8998 -4.0128 13 6 3.5460 0.6505 -0.0006 14 7 3.5096 -0.6903 -0.0015 15 6 2.2663 -1.0870 0.0043 16 6 1.8018 -2.5206 0.0118 17 6 0.8278 -2.7470 -1.1462 18 6 3.0080 -3.4482 -0.1475 19 6 1.0981 -2.8218 1.3365 20 1 -0.3633 0.0901 -1.0237 21 1 -0.3633 0.8416 0.5899 22 1 -0.3633 -0.9316 0.4338 23 1 0.8392 2.6180 0.4331 24 1 2.5347 3.1368 0.5889 25 1 0.8346 6.0699 -0.8495 26 1 4.4369 1.2612 -0.0003 27 1 1.3292 -2.5324 -2.0900 28 1 0.4921 -3.7841 -1.1411 29 1 -0.0315 -2.0861 -1.0327 30 1 3.7019 -3.2870 0.6774 31 1 2.6721 -4.4852 -0.1417 32 1 3.5094 -3.2336 -1.0912 33 1 0.1779 -2.2409 1.3994 34 1 0.8613 -3.8845 1.3887 35 1 1.7538 -2.5546 2.1652 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = 36.923710 kcal Electronic energy + Delta-G solvation = -15498.108580 eV Core-core repulsion = 13110.482124 eV Total energy + Delta-G solvation = -2387.626455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.46924 -36.49494 -33.60830 -33.05286 -30.20343 -27.25293 -27.15685 -26.46786 -26.24614 -23.10264 -21.29814 -19.29139 -18.43651 -16.43713 -15.92432 -15.00423 -14.63217 -14.43061 -14.03845 -13.98296 -12.97323 -12.53891 -12.35271 -12.23979 -12.18439 -12.01669 -11.84859 -11.56564 -11.41972 -11.03361 -10.87850 -10.78450 -10.69129 -10.57525 -9.95315 -9.53250 -9.08165 -8.74027 -8.47450 -7.25897 -6.09457 -4.14331 2.91247 3.28582 3.32997 3.36936 3.52898 3.94884 4.40835 4.63398 4.92645 5.09343 5.14566 5.24505 5.36115 5.59745 5.61697 5.66667 5.79750 5.83224 5.86612 5.97108 6.01423 6.07375 6.18673 6.38828 6.43361 6.52303 6.67979 6.95471 7.38375 7.67498 7.68541 7.85377 8.00348 8.25974 8.89553 8.91682 9.50131 10.99351 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.042331 B = 0.007025 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.294734 B = 3984.624744 C = 4026.015063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.453 5.453 3 C 0.039 3.961 4 C 0.085 3.915 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 C -0.063 4.063 14 N -0.489 5.489 15 C 0.175 3.825 16 C 0.024 3.976 17 C -0.149 4.149 18 C -0.122 4.122 19 C -0.143 4.143 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.024 0.976 24 H 0.043 0.957 25 H 0.264 0.736 26 H 0.161 0.839 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 -13.807 2.007 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.137 5.137 3 C -0.076 4.076 4 C 0.047 3.953 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.209 4.209 14 N -0.208 5.208 15 C -0.085 4.085 16 C 0.022 3.978 17 C -0.207 4.207 18 C -0.179 4.179 19 C -0.201 4.201 20 H 0.091 0.909 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.178 0.822 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.312 -14.123 2.044 14.456 hybrid contribution -0.780 1.193 -1.020 1.753 sum -3.091 -12.929 1.024 13.333 Atomic orbital electron populations 1.22067 0.78084 1.03365 1.03468 1.44948 1.06826 1.06472 1.55449 1.22317 0.90543 0.91179 1.03553 1.17831 0.97011 0.82384 0.98052 1.21011 1.45739 0.96524 0.91879 0.92573 1.24987 0.95120 0.96719 0.97321 1.69935 1.45438 1.07003 1.30946 0.86577 0.78663 0.77731 0.84620 1.20308 1.21154 1.20028 1.21839 0.96230 0.90287 1.12498 1.70010 1.18474 1.12374 1.19901 1.22635 0.86218 0.89733 1.09955 1.18806 0.96068 0.87172 0.95721 1.22056 0.98914 1.01617 0.98081 1.21601 0.96529 0.96626 1.03187 1.21983 1.00211 1.01317 0.96570 0.90885 0.89776 0.90157 0.95806 0.93919 0.92683 0.82191 0.92203 0.91981 0.92285 0.91835 0.92953 0.92138 0.92639 0.91939 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.24 59.85 0.55 1.70 16 2 N -0.45 -8.93 3.15 -116.68 -0.37 -9.29 16 3 C 0.04 0.90 6.14 -81.60 -0.50 0.40 16 4 C 0.09 2.19 5.31 -29.03 -0.15 2.04 16 5 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C -0.06 -1.42 11.79 -17.81 -0.21 -1.63 16 14 N -0.49 -10.42 10.52 -10.81 -0.11 -10.54 16 15 C 0.18 3.29 6.25 -155.42 -0.97 2.32 16 16 C 0.02 0.34 0.75 -155.66 -0.12 0.22 16 17 C -0.15 -1.82 8.25 37.16 0.31 -1.52 16 18 C -0.12 -1.59 7.95 37.16 0.30 -1.30 16 19 C -0.14 -1.68 8.33 37.16 0.31 -1.37 16 20 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 21 H 0.08 1.35 7.29 -51.93 -0.38 0.97 16 22 H 0.08 0.99 4.30 -51.93 -0.22 0.77 16 23 H 0.02 0.62 7.21 -51.93 -0.37 0.25 16 24 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.16 3.43 8.06 -52.49 -0.42 3.01 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.70 5.26 -51.93 -0.27 0.43 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.62 5.75 -51.93 -0.30 0.32 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -31.05 283.44 -6.70 -37.76 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.31 Total: -1.24 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.90 Total: -12.18 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.25 Total: -45.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.05 -6.70 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.682 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds