Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36884 * 126.39412 * 2 1 4 4 C 1.50701 * 126.59528 * 359.96891 * 3 2 1 5 5 C 1.50702 * 109.46875 * 264.99875 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99689 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99961 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47237 * 60.00497 * 9 7 5 11 11 H 1.48496 * 109.47102 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47075 * 300.00353 * 9 7 5 13 13 C 1.34673 * 106.81424 * 180.02562 * 3 2 1 14 14 N 1.34130 * 108.02133 * 0.02562 * 13 3 2 15 15 C 1.30500 * 109.25476 * 359.72811 * 14 13 3 16 16 C 1.50703 * 125.64992 * 180.29474 * 15 14 13 17 17 C 1.52997 * 109.46686 * 233.67313 * 16 15 14 18 18 C 1.52997 * 109.46804 * 353.67080 * 16 15 14 19 19 C 1.52999 * 109.47158 * 113.67226 * 16 15 14 20 20 H 1.08995 * 109.47040 * 84.96832 * 1 2 3 21 21 H 1.09003 * 109.46993 * 324.97242 * 1 2 3 22 22 H 1.08997 * 109.46968 * 204.97196 * 1 2 3 23 23 H 1.09001 * 109.46736 * 24.99619 * 4 3 2 24 24 H 1.09000 * 109.46968 * 144.99755 * 4 3 2 25 25 H 0.96998 * 119.99915 * 179.97438 * 8 7 5 26 26 H 1.08000 * 125.99087 * 180.02562 * 13 3 2 27 27 H 1.09003 * 109.47315 * 60.00481 * 17 16 15 28 28 H 1.09008 * 109.46806 * 179.97438 * 17 16 15 29 29 H 1.08997 * 109.47478 * 299.99651 * 17 16 15 30 30 H 1.09000 * 109.47436 * 60.00651 * 18 16 15 31 31 H 1.09001 * 109.46899 * 179.97438 * 18 16 15 32 32 H 1.08994 * 109.47645 * 300.00472 * 18 16 15 33 33 H 1.09003 * 109.46638 * 66.28077 * 19 16 15 34 34 H 1.08997 * 109.46871 * 186.28254 * 19 16 15 35 35 H 1.08996 * 109.47168 * 306.28041 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 1.8363 2.5429 -0.0007 5 6 1.8084 3.0590 -1.4163 6 1 2.0829 2.4087 -2.2336 7 6 1.4325 4.3615 -1.6679 8 7 1.0987 5.1535 -0.6725 9 14 1.3986 5.0015 -3.4225 10 1 0.4479 4.1921 -4.2264 11 1 0.9641 6.4214 -3.4232 12 1 2.7574 4.8998 -4.0128 13 6 3.5460 0.6505 -0.0006 14 7 3.5096 -0.6903 -0.0015 15 6 2.2663 -1.0870 0.0043 16 6 1.8018 -2.5206 0.0118 17 6 0.8278 -2.7470 -1.1462 18 6 3.0080 -3.4482 -0.1475 19 6 1.0981 -2.8218 1.3365 20 1 -0.3633 0.0901 -1.0237 21 1 -0.3633 0.8416 0.5899 22 1 -0.3633 -0.9316 0.4338 23 1 0.8392 2.6180 0.4331 24 1 2.5347 3.1368 0.5889 25 1 0.8346 6.0699 -0.8495 26 1 4.4369 1.2612 -0.0003 27 1 1.3292 -2.5324 -2.0900 28 1 0.4921 -3.7841 -1.1411 29 1 -0.0315 -2.0861 -1.0327 30 1 3.7019 -3.2870 0.6774 31 1 2.6721 -4.4852 -0.1417 32 1 3.5094 -3.2336 -1.0912 33 1 0.1779 -2.2409 1.3994 34 1 0.8613 -3.8845 1.3887 35 1 1.7538 -2.5546 2.1652 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = 18.874613 kcal Electronic energy + Delta-G solvation = -15498.891247 eV Core-core repulsion = 13110.482124 eV Total energy + Delta-G solvation = -2388.409123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.05375 -37.65207 -35.50875 -34.77730 -32.13122 -28.33883 -28.19941 -28.12573 -27.68067 -25.08934 -22.73632 -20.94749 -19.79360 -18.58755 -17.39709 -16.58693 -16.47875 -15.70239 -15.34500 -15.05272 -14.45296 -14.42961 -14.13079 -13.56467 -13.49282 -13.35460 -13.09392 -12.92027 -12.75596 -12.64692 -12.55891 -12.18717 -11.96862 -11.88836 -11.62664 -11.56287 -10.81325 -10.60027 -10.32264 -9.00193 -8.22951 -6.37974 1.27263 1.38548 1.40460 1.49117 2.03853 2.25854 2.40434 3.06582 3.39986 3.85102 3.93357 4.04805 4.17839 4.30989 4.35425 4.58865 4.62372 4.74065 4.76775 4.82578 4.87625 5.01609 5.02020 5.07669 5.22330 5.24463 5.26975 5.42042 5.50937 5.67042 5.78276 5.90621 6.12460 6.51716 6.71013 7.26650 7.31722 8.84181 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.042331 B = 0.007025 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.294734 B = 3984.624744 C = 4026.015063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.455 5.455 3 C 0.008 3.992 4 C 0.100 3.900 5 C -0.530 4.530 6 H 0.046 0.954 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.272 1.272 13 C -0.075 4.075 14 N -0.516 5.516 15 C 0.195 3.805 16 C 0.019 3.981 17 C -0.146 4.146 18 C -0.119 4.119 19 C -0.139 4.139 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.121 0.879 23 H 0.011 0.989 24 H 0.017 0.983 25 H 0.268 0.732 26 H 0.158 0.842 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -15.904 1.273 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.138 5.138 3 C -0.107 4.107 4 C 0.062 3.938 5 C -0.568 4.568 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.198 1.198 13 C -0.221 4.221 14 N -0.235 5.235 15 C -0.068 4.068 16 C 0.017 3.983 17 C -0.204 4.204 18 C -0.176 4.176 19 C -0.197 4.197 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.139 0.861 23 H 0.030 0.970 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.175 0.825 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.685 -16.219 1.315 16.684 hybrid contribution -0.352 1.757 -0.748 1.942 sum -4.038 -14.461 0.567 15.025 Atomic orbital electron populations 1.22353 0.75810 1.05258 1.04003 1.45126 1.08256 1.05606 1.54825 1.21872 0.91403 0.90950 1.06497 1.17465 0.95518 0.84141 0.96677 1.21217 1.46120 0.96971 0.92530 0.93577 1.25811 0.94419 0.96765 1.01583 1.70038 1.45870 1.07416 1.33087 0.85536 0.78809 0.77485 0.79451 1.19332 1.20149 1.19755 1.21957 0.96251 0.91305 1.12551 1.70039 1.20213 1.11387 1.21832 1.23780 0.85457 0.91600 1.05914 1.19189 0.97197 0.83842 0.98105 1.22060 0.98152 1.04059 0.96106 1.21601 0.95863 0.98540 1.01635 1.21972 0.99709 1.03755 0.94217 0.90531 0.90565 0.86145 0.97036 0.96500 0.92318 0.82458 0.93948 0.88356 0.91880 0.93231 0.89199 0.93883 0.91923 0.88422 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.02 9.24 127.77 1.18 3.20 16 2 N -0.46 -17.82 3.15 -523.05 -1.65 -19.47 16 3 C 0.01 0.40 6.14 40.95 0.25 0.65 16 4 C 0.10 5.38 5.31 29.10 0.15 5.53 16 5 C -0.53 -30.35 9.09 25.60 0.23 -30.11 16 6 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 7 C 0.01 0.75 5.46 84.66 0.46 1.21 16 8 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 9 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 C -0.08 -3.52 11.79 83.52 0.98 -2.54 16 14 N -0.52 -22.22 10.52 -188.13 -1.98 -24.20 16 15 C 0.19 7.15 6.25 138.13 0.86 8.01 16 16 C 0.02 0.47 0.75 -52.93 -0.04 0.43 16 17 C -0.15 -3.04 8.25 71.98 0.59 -2.45 16 18 C -0.12 -2.80 7.95 71.98 0.57 -2.23 16 19 C -0.14 -2.73 8.33 71.98 0.60 -2.13 16 20 H 0.08 2.26 8.02 -2.39 -0.02 2.24 16 21 H 0.08 2.42 7.29 -2.39 -0.02 2.41 16 22 H 0.12 2.59 4.30 -2.39 -0.01 2.58 16 23 H 0.01 0.63 7.21 -2.39 -0.02 0.61 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.16 7.16 8.06 -2.91 -0.02 7.13 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.06 1.26 5.26 -2.39 -0.01 1.25 16 30 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.14 5.75 -2.39 -0.01 1.12 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -68.45 283.44 5.60 -62.85 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.06 Total: 9.35 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 5.85 Total: -20.42 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.34 Total: -97.85 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.45 5.60 -62.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.727 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds