Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86805 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99848 * 3 2 1 5 5 H 1.48500 * 109.46716 * 30.00238 * 3 2 1 6 6 H 1.48501 * 109.46726 * 149.99709 * 3 2 1 7 7 C 1.39897 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.41454 * 120.00102 * 359.97438 * 7 2 1 10 10 N 1.33256 * 125.84222 * 359.97438 * 9 7 2 11 11 N 1.39973 * 108.64622 * 180.02562 * 10 9 7 12 12 C 1.36533 * 132.14498 * 180.02562 * 11 10 9 13 13 C 1.35558 * 119.18221 * 179.97438 * 12 11 10 14 14 C 1.40341 * 119.48645 * 0.28090 * 13 12 11 15 15 N 1.31140 * 120.29765 * 359.42371 * 14 13 12 16 16 C 1.34249 * 120.83560 * 0.57984 * 15 14 13 17 17 C 1.38385 * 132.14808 * 179.70599 * 16 15 14 18 18 Cl 1.73599 * 126.23519 * 0.02562 * 17 16 15 19 19 H 0.96995 * 120.00305 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.40631 * 359.97438 * 12 11 10 21 21 H 1.08002 * 120.25334 * 179.97438 * 13 12 11 22 22 H 1.08006 * 119.85317 * 179.71691 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5401 1.4402 0.7001 7 6 2.0080 -1.2115 -0.0005 8 1 3.0880 -1.2115 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 7 -0.0249 -2.5723 0.0004 11 7 -0.3350 -3.9372 0.0006 12 6 -1.5252 -4.6062 0.0011 13 6 -1.5214 -5.9618 0.0007 14 6 -0.2979 -6.6492 0.0058 15 7 0.8335 -5.9861 -0.0004 16 6 0.8444 -4.6436 -0.0001 17 6 1.8778 -3.7233 -0.0004 18 17 3.5754 -4.0866 -0.0020 19 1 -0.4850 0.8400 -0.0004 20 1 -2.4581 -4.0621 0.0017 21 1 -2.4528 -6.5086 0.0014 22 1 -0.2879 -7.7292 0.0102 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029195.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = 76.816429 kcal Electronic energy + Delta-G solvation = -12501.739974 eV Core-core repulsion = 10083.627367 eV Total energy + Delta-G solvation = -2418.112607 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.51158 -38.50231 -36.95610 -35.46558 -34.33607 -31.68582 -29.32893 -28.18243 -24.91141 -23.69095 -21.90505 -19.33631 -18.61701 -17.56153 -16.76545 -16.54273 -16.51496 -15.23431 -14.79494 -14.53865 -13.71973 -13.45257 -13.09804 -12.89735 -12.83864 -12.76943 -12.01634 -11.74905 -11.60593 -11.24392 -11.06194 -10.28119 -9.95076 -8.59057 -8.43506 -6.66182 0.00576 0.30468 1.36621 1.37267 1.41464 1.56701 2.10813 2.20564 2.28702 2.75557 3.25789 3.33061 3.74142 3.90116 4.37421 4.68577 4.74248 4.95233 5.13278 5.29476 5.45758 5.91340 6.29848 6.53246 6.78557 7.01046 7.39414 8.38547 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.035134 B = 0.010494 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.749165 B = 2667.609896 C = 3454.515653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.026 3.974 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.452 4.452 8 H 0.096 0.904 9 C 0.222 3.778 10 N -0.369 5.369 11 N -0.333 5.333 12 C 0.145 3.855 13 C -0.244 4.244 14 C 0.173 3.827 15 N -0.514 5.514 16 C 0.242 3.758 17 C -0.261 4.261 18 Cl -0.055 7.055 19 H 0.286 0.714 20 H 0.188 0.812 21 H 0.210 0.790 22 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -7.109 0.021 7.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.193 4.193 3 Si 0.815 3.185 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.114 0.886 9 C 0.078 3.922 10 N -0.204 5.204 11 N -0.101 5.101 12 C 0.007 3.993 13 C -0.268 4.268 14 C -0.009 4.009 15 N -0.227 5.227 16 C 0.016 3.984 17 C -0.301 4.301 18 Cl -0.027 7.027 19 H 0.096 0.904 20 H 0.205 0.795 21 H 0.226 0.774 22 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.756 -6.595 0.022 7.589 hybrid contribution 0.449 0.673 -0.011 0.809 sum -3.306 -5.922 0.011 6.782 Atomic orbital electron populations 1.69986 1.08894 1.30187 1.32784 1.26961 0.95793 1.04768 0.91777 0.84995 0.78897 0.74974 0.79632 1.18491 1.18997 1.17786 1.19236 0.94699 0.88261 1.46701 0.88624 1.19661 0.89659 0.92442 0.90454 1.79441 1.13398 0.83492 1.44095 1.47673 1.05974 1.09156 1.47279 1.22636 0.88472 0.93911 0.94296 1.22090 1.02614 0.91395 1.10715 1.24141 0.86539 1.02571 0.87673 1.68304 1.32058 1.02883 1.19491 1.19994 0.87382 0.88849 1.02137 1.20276 0.84186 0.92059 1.33614 1.98147 1.11764 1.94705 1.98118 0.90359 0.79537 0.77358 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.54 11.92 21.82 0.26 -43.28 14 2 C 0.03 1.35 5.49 85.24 0.47 1.82 14 3 Si 1.00 39.13 29.56 68.60 2.03 41.16 14 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 14 5 H -0.27 -9.84 7.11 99.48 0.71 -9.14 14 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 14 7 C -0.45 -25.51 9.23 23.46 0.22 -25.29 14 8 H 0.10 5.16 7.74 -2.91 -0.02 5.13 14 9 C 0.22 13.00 6.73 40.40 0.27 13.27 14 10 N -0.37 -21.28 10.88 -52.12 -0.57 -21.85 14 11 N -0.33 -16.15 3.89 -192.41 -0.75 -16.90 14 12 C 0.15 4.97 11.30 83.34 0.94 5.91 14 13 C -0.24 -5.91 10.05 22.16 0.22 -5.69 14 14 C 0.17 4.77 11.27 85.31 0.96 5.73 14 15 N -0.51 -20.88 10.49 -192.46 -2.02 -22.90 14 16 C 0.24 11.91 7.88 132.83 1.05 12.96 14 17 C -0.26 -14.07 6.78 22.99 0.16 -13.91 14 18 Cl -0.06 -2.60 29.03 -2.72 -0.08 -2.68 14 19 H 0.29 14.10 8.30 -92.71 -0.77 13.33 14 20 H 0.19 5.25 8.06 -2.91 -0.02 5.22 14 21 H 0.21 2.53 8.06 -2.91 -0.02 2.50 14 22 H 0.22 3.44 8.06 -2.91 -0.02 3.41 14 Total: -1.00 -73.68 226.04 4.42 -69.26 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.26 Total: 2.38 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.29 Total: -5.19 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.08 Total: -104.92 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -73.68 4.42 -69.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029195.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.075 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds