Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.50698 * 109.46803 * 240.00707 * 2 1 3 5 5 H 1.08000 * 120.00271 * 239.99642 * 4 2 1 6 6 C 1.37878 * 120.00304 * 60.00008 * 4 2 1 7 7 N 1.31517 * 119.99604 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00295 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47172 * 59.99786 * 8 6 4 10 10 H 1.48498 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47056 * 299.99593 * 8 6 4 12 12 C 1.50696 * 109.47609 * 120.00456 * 2 1 3 13 13 C 1.35315 * 126.03620 * 60.02646 * 12 2 1 14 14 N 1.34954 * 107.74451 * 180.02562 * 13 12 2 15 15 H 0.97001 * 126.03127 * 180.02562 * 14 13 12 16 16 N 1.40082 * 107.92310 * 359.97438 * 14 13 12 17 17 C 1.30834 * 108.20758 * 0.02562 * 16 14 13 18 18 C 1.50704 * 125.89824 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.46965 * 0.02562 * 18 17 16 20 20 C 1.52992 * 109.46911 * 120.02537 * 18 17 16 21 21 C 1.53000 * 109.47018 * 240.02671 * 18 17 16 22 22 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46630 * 299.99037 * 1 2 3 24 24 H 1.08996 * 109.47549 * 59.98966 * 1 2 3 25 25 H 0.97003 * 120.00187 * 180.02562 * 7 6 4 26 26 H 1.08001 * 126.12976 * 0.25852 * 13 12 2 27 27 H 1.09003 * 109.47525 * 60.00014 * 19 18 17 28 28 H 1.09000 * 109.47047 * 179.97438 * 19 18 17 29 29 H 1.08999 * 109.47745 * 300.00149 * 19 18 17 30 30 H 1.08995 * 109.47385 * 60.00290 * 20 18 17 31 31 H 1.09000 * 109.47130 * 180.02562 * 20 18 17 32 32 H 1.08999 * 109.47253 * 299.99886 * 20 18 17 33 33 H 1.08994 * 109.47342 * 59.99964 * 21 18 17 34 34 H 1.09000 * 109.46717 * 180.02562 * 21 18 17 35 35 H 1.08999 * 109.46919 * 300.00094 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1317 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8300 -2.6033 8 14 2.3223 -1.1191 -4.0082 9 1 1.8279 -2.5193 -4.0085 10 1 1.8266 -0.4193 -5.2205 11 1 3.8073 -1.1184 -4.0080 12 6 2.0324 -0.7105 1.2303 13 6 1.7824 -1.9978 1.5641 14 7 2.4087 -2.2487 2.7329 15 1 2.4051 -3.0917 3.2127 16 7 3.0657 -1.0770 3.1302 17 6 2.8393 -0.1558 2.2291 18 6 3.3582 1.2587 2.2618 19 6 4.2018 1.4634 3.5216 20 6 4.2199 1.5145 1.0238 21 6 2.1795 2.2342 2.2733 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5140 -0.8898 25 1 0.7079 1.1613 -3.4842 26 1 1.1911 -2.6998 0.9950 27 1 5.0416 0.7685 3.5135 28 1 4.5775 2.4864 3.5450 29 1 3.5880 1.2811 4.4037 30 1 3.6189 1.3687 0.1263 31 1 4.5956 2.5375 1.0476 32 1 5.0596 0.8196 1.0156 33 1 1.5656 2.0519 3.1552 34 1 2.5548 3.2572 2.2965 35 1 1.5784 2.0882 1.3758 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081373.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = 34.205034 kcal Electronic energy + Delta-G solvation = -15903.215441 eV Core-core repulsion = 13515.471095 eV Total energy + Delta-G solvation = -2387.744346 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.09934 -37.64188 -36.13798 -33.03611 -31.43674 -29.16683 -28.03015 -27.98094 -27.02034 -23.65871 -23.27801 -20.61186 -19.16977 -18.36925 -17.98298 -16.46876 -15.80515 -15.58548 -15.16258 -14.70409 -14.44507 -13.98987 -13.83935 -13.33848 -13.03080 -12.84515 -12.78556 -12.72341 -12.46874 -12.32260 -12.15623 -12.07998 -11.84819 -11.79520 -11.40630 -10.98144 -10.69897 -10.26067 -10.07865 -8.98661 -7.96552 -6.07590 1.16285 1.45503 1.46653 1.53214 2.11368 2.23389 2.52895 3.30463 3.76937 4.02078 4.22184 4.36485 4.45252 4.74481 4.87247 4.89385 4.90570 5.00329 5.05388 5.09565 5.16591 5.20724 5.32256 5.33431 5.41935 5.47601 5.55811 5.68508 5.74555 5.98696 6.19427 6.25079 6.54197 6.69103 6.99221 7.02892 7.58620 9.06558 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.009980 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.830370 B = 2805.049430 C = 3097.853132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.108 3.892 3 H 0.032 0.968 4 C -0.510 4.510 5 H 0.043 0.957 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.941 3.059 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.278 1.278 12 C -0.207 4.207 13 C 0.045 3.955 14 N -0.479 5.479 15 H 0.447 0.553 16 N -0.321 5.321 17 C 0.074 3.926 18 C 0.014 3.986 19 C -0.123 4.123 20 C -0.138 4.138 21 C -0.137 4.137 22 H 0.025 0.975 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.259 0.741 26 H 0.182 0.818 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -0.938 8.891 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.049 0.951 4 C -0.548 4.548 5 H 0.061 0.939 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.768 3.232 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.204 1.204 12 C -0.218 4.218 13 C -0.101 4.101 14 N -0.189 5.189 15 H 0.293 0.707 16 N -0.145 5.145 17 C -0.092 4.092 18 C 0.012 3.988 19 C -0.180 4.180 20 C -0.196 4.196 21 C -0.195 4.195 22 H 0.044 0.956 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.199 0.801 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.377 -1.127 9.850 10.474 hybrid contribution -0.339 -0.969 -1.697 1.983 sum 3.038 -2.096 8.153 8.950 Atomic orbital electron populations 1.21658 0.98603 0.98631 0.99084 1.17177 0.91620 0.94728 0.87576 0.95056 1.21404 1.30146 1.11837 0.91440 0.93916 1.25558 0.95586 0.95748 1.01119 1.69987 1.37817 1.24001 1.23613 0.85883 0.78560 0.78944 0.79833 1.19951 1.21206 1.20372 1.20615 1.05815 0.95088 1.00265 1.22432 1.00073 0.98110 0.89507 1.46036 1.41521 1.12325 1.19044 0.70734 1.76976 1.20776 0.92776 1.23973 1.22434 0.97658 0.96431 0.92690 1.18985 0.95790 0.86976 0.97046 1.21684 0.98892 1.02010 0.95413 1.21896 0.98918 1.01607 0.97176 1.21909 0.97080 0.98750 1.01775 0.95587 0.96372 0.92453 0.93213 0.80119 0.93304 0.90490 0.92839 0.92935 0.90411 0.93776 0.92905 0.90203 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.85 71.98 0.64 -5.18 16 2 C 0.11 5.27 1.45 -12.29 -0.02 5.25 16 3 H 0.03 1.63 3.88 -2.39 -0.01 1.62 16 4 C -0.51 -27.22 8.40 25.60 0.21 -27.00 16 5 H 0.04 2.30 7.71 -2.91 -0.02 2.28 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -51.24 11.32 21.45 0.24 -50.99 16 8 Si 0.94 43.10 29.54 68.60 2.03 45.12 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C -0.21 -8.87 4.60 -20.15 -0.09 -8.97 16 13 C 0.04 1.66 11.37 83.54 0.95 2.61 16 14 N -0.48 -15.52 7.36 -57.59 -0.42 -15.94 16 15 H 0.45 10.54 8.96 -213.33 -1.91 8.63 16 16 N -0.32 -11.95 11.99 -47.38 -0.57 -12.52 16 17 C 0.07 2.92 5.61 43.10 0.24 3.16 16 18 C 0.01 0.49 0.75 -52.93 -0.04 0.45 16 19 C -0.12 -3.46 7.95 71.98 0.57 -2.89 16 20 C -0.14 -4.90 8.28 71.98 0.60 -4.31 16 21 C -0.14 -4.49 8.28 71.98 0.60 -3.89 16 22 H 0.02 1.16 8.00 -2.39 -0.02 1.14 16 23 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 25 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.18 6.05 8.06 -2.91 -0.02 6.02 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 2.26 5.55 -2.39 -0.01 2.24 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.93 5.55 -2.39 -0.01 1.92 16 Total: -1.00 -60.93 279.60 4.55 -56.38 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.83 Total: 17.30 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 4.11 Total: -39.34 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -0.75 Total: -79.46 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -60.93 4.55 -56.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081373.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.584 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds