Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.55215 * 1 3 3 C 1.53013 * 106.32132 * 2 1 4 4 C 1.51966 * 106.82424 * 241.38733 * 2 1 3 5 5 C 1.51985 * 114.26414 * 202.82156 * 4 2 1 6 6 H 1.11100 * 107.13055 * 170.37568 * 5 4 2 7 7 C 1.51221 * 112.93597 * 288.71161 * 5 4 2 8 8 C 1.50645 * 117.24455 * 87.63871 * 7 5 4 9 9 C 1.50713 * 119.13403 * 14.69496 * 8 7 5 10 10 C 1.51773 * 116.02901 * 342.02258 * 9 8 7 11 11 H 1.11107 * 107.30690 * 159.74273 * 10 9 8 12 12 C 1.51435 * 112.62251 * 277.85968 * 10 9 8 13 13 C 1.52421 * 110.05210 * 43.86103 * 10 9 8 14 14 C 1.50330 * 110.59964 * 173.00345 * 13 10 9 15 15 H 1.07998 * 119.99936 * 118.65959 * 14 13 10 16 16 C 1.37878 * 119.99774 * 298.66878 * 14 13 10 17 17 N 1.31518 * 120.00255 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47230 * 59.99548 * 18 16 14 20 20 H 1.48499 * 109.46924 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47163 * 299.99364 * 18 16 14 22 22 H 1.08999 * 109.47254 * 301.41530 * 1 2 3 23 23 H 1.09001 * 109.47065 * 61.41740 * 1 2 3 24 24 H 1.09005 * 109.47228 * 181.41557 * 1 2 3 25 25 H 1.09001 * 109.47244 * 167.62515 * 3 2 1 26 26 H 1.09003 * 109.47161 * 287.62496 * 3 2 1 27 27 H 1.09005 * 109.47482 * 47.62380 * 3 2 1 28 28 H 1.09629 * 109.30777 * 326.19706 * 4 2 1 29 29 H 1.10252 * 108.39069 * 81.73172 * 4 2 1 30 30 H 1.10833 * 108.12207 * 210.61506 * 7 5 4 31 31 H 1.10563 * 108.61055 * 323.65951 * 7 5 4 32 32 H 1.10388 * 109.63107 * 247.59658 * 8 7 5 33 33 H 1.11693 * 107.22499 * 136.51351 * 8 7 5 34 34 H 1.10342 * 109.24415 * 218.95951 * 9 8 7 35 35 H 1.10519 * 108.83332 * 104.20087 * 9 8 7 36 36 H 1.10389 * 108.52150 * 315.31075 * 12 10 9 37 37 H 1.10184 * 109.12466 * 200.71934 * 12 10 9 38 38 H 1.09218 * 109.55735 * 52.36315 * 13 10 9 39 39 H 0.97001 * 120.00016 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5522 0.0000 0.0000 3 6 1.9822 1.4685 0.0000 4 6 1.9920 -0.6966 -1.2770 5 6 3.3952 -1.2777 -1.2199 6 1 3.5282 -1.9019 -2.1293 7 6 4.4731 -0.2171 -1.2307 8 6 4.8917 0.3543 0.0989 9 6 4.4904 -0.3603 1.3637 10 6 3.3528 -1.3565 1.2335 11 1 3.4162 -2.0460 2.1025 12 6 1.9913 -0.6948 1.2753 13 6 3.5422 -2.2055 -0.0181 14 6 2.5198 -3.3063 -0.0703 15 1 1.8165 -3.3518 -0.8886 16 6 2.4799 -4.2579 0.9267 17 7 3.3366 -4.2027 1.9231 18 14 1.2090 -5.6254 0.8623 19 1 1.3950 -6.4159 -0.3809 20 1 1.3758 -6.5120 2.0418 21 1 -0.1538 -5.0356 0.8746 22 1 -0.3634 0.5356 0.8770 23 1 -0.3633 0.4917 -0.9024 24 1 -0.3634 -1.0274 0.0254 25 1 3.0476 1.5351 0.2202 26 1 1.7856 1.9046 -0.9794 27 1 1.4195 2.0119 0.7592 28 1 1.2740 -1.4872 -1.5244 29 1 1.9487 0.0320 -2.1033 30 1 5.3680 -0.6401 -1.7294 31 1 4.1490 0.6088 -1.8904 32 1 4.5836 1.4124 0.1613 33 1 6.0068 0.4180 0.0951 34 1 4.2190 0.3842 2.1315 35 1 5.3704 -0.8938 1.7666 36 1 1.9861 0.0451 2.0945 37 1 1.2332 -1.4458 1.5497 38 1 4.5438 -2.6410 -0.0164 39 1 3.3087 -4.8724 2.6243 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260108605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -35.560267 kcal Electronic energy + Delta-G solvation = -17017.329895 eV Core-core repulsion = 14730.100642 eV Total energy + Delta-G solvation = -2287.229253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45046 -34.53309 -32.90286 -31.64705 -30.17840 -26.43092 -26.06095 -25.52238 -23.92930 -21.06553 -20.31304 -18.78670 -16.71037 -15.36199 -14.65976 -14.38987 -13.87975 -13.57358 -13.48749 -13.22961 -12.73799 -12.46330 -12.04681 -11.92570 -11.62110 -11.28973 -11.11418 -10.90489 -10.76498 -10.41248 -10.25363 -10.16569 -10.06278 -9.80414 -9.59276 -9.42864 -9.25286 -8.80088 -8.51488 -8.23838 -8.09687 -5.88908 -3.92759 3.35694 3.40636 3.43385 4.50422 5.27417 5.40486 5.45725 5.53138 5.59055 5.74678 5.83938 6.01953 6.14212 6.16871 6.26880 6.32637 6.36401 6.39525 6.40969 6.50476 6.59057 6.59298 6.75494 6.77120 6.86035 6.93724 7.01358 7.04061 7.11177 7.23464 7.26947 7.36965 7.52573 7.80318 7.85970 8.10528 8.25823 8.61413 9.10254 9.69897 11.16416 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.012404 C = 0.010722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.932431 B = 2256.875225 C = 2610.933149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C -0.152 4.152 4 C -0.075 4.075 5 C -0.076 4.076 6 H 0.044 0.956 7 C -0.093 4.093 8 C -0.098 4.098 9 C -0.099 4.099 10 C -0.086 4.086 11 H 0.098 0.902 12 C -0.068 4.068 13 C 0.070 3.930 14 C -0.496 4.496 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.882 3.118 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.279 1.279 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.024 0.976 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 8.534 -2.697 9.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 C -0.209 4.209 4 C -0.113 4.113 5 C -0.095 4.095 6 H 0.062 0.938 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.105 4.105 11 H 0.116 0.884 12 C -0.106 4.106 13 C 0.052 3.948 14 C -0.535 4.535 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.711 3.289 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.204 1.204 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.951 8.446 -2.530 8.868 hybrid contribution -0.737 -0.717 0.040 1.029 sum -1.688 7.729 -2.490 8.293 Atomic orbital electron populations 1.22580 0.96753 1.01248 0.99769 1.20197 0.93634 0.94012 0.96511 1.22294 1.02690 0.95986 0.99922 1.21186 0.97280 0.98237 0.94562 1.20645 0.92518 0.95526 1.00767 0.93770 1.20957 0.98467 0.98143 0.95491 1.20955 0.98869 0.98334 0.95332 1.21151 0.99676 0.98038 0.94808 1.20634 0.90396 0.94963 1.04464 0.88416 1.20985 0.98549 0.97458 0.93604 1.18254 0.96855 0.90910 0.88819 1.21039 1.16070 1.08937 1.07421 0.92843 1.24904 0.95706 0.97553 0.95719 1.69825 1.36376 1.35239 1.11735 0.86811 0.82365 0.82454 0.77279 1.20484 1.21508 1.20427 0.93913 0.94086 0.92689 0.91144 0.94025 0.94040 0.92286 0.95322 0.94247 0.94237 0.93585 0.95087 0.94606 0.93946 0.95699 0.92755 0.95855 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 7.68 38.33 0.29 -2.17 16 2 C -0.04 -0.80 0.63 -154.50 -0.10 -0.89 16 3 C -0.15 -2.43 7.95 37.16 0.30 -2.14 16 4 C -0.08 -1.45 3.78 -27.77 -0.11 -1.55 16 5 C -0.08 -1.57 2.11 -92.27 -0.19 -1.76 16 6 H 0.04 0.93 8.29 -50.72 -0.42 0.51 16 7 C -0.09 -1.67 4.76 -28.81 -0.14 -1.81 16 8 C -0.10 -1.71 4.47 -29.06 -0.13 -1.84 16 9 C -0.10 -1.95 4.94 -28.50 -0.14 -2.09 16 10 C -0.09 -1.94 2.02 -92.33 -0.19 -2.13 16 11 H 0.10 2.57 6.06 -50.72 -0.31 2.26 16 12 C -0.07 -1.43 3.80 -28.17 -0.11 -1.53 16 13 C 0.07 1.69 1.75 -92.48 -0.16 1.53 16 14 C -0.50 -13.14 7.38 -34.62 -0.26 -13.40 16 15 H 0.05 1.41 6.72 -52.49 -0.35 1.06 16 16 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 17 N -0.89 -25.10 11.33 55.43 0.63 -24.47 16 18 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.04 0.66 8.05 -51.93 -0.42 0.25 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 25 H 0.07 1.14 3.59 -51.93 -0.19 0.95 16 26 H 0.04 0.61 7.74 -51.93 -0.40 0.21 16 27 H 0.04 0.61 7.95 -51.93 -0.41 0.20 16 28 H 0.06 1.21 6.60 -51.57 -0.34 0.87 16 29 H 0.03 0.49 7.53 -51.21 -0.39 0.11 16 30 H 0.04 0.68 8.29 -50.88 -0.42 0.26 16 31 H 0.04 0.64 7.97 -51.03 -0.41 0.23 16 32 H 0.05 0.73 6.06 -51.14 -0.31 0.42 16 33 H 0.03 0.50 8.34 -50.37 -0.42 0.08 16 34 H 0.04 0.65 7.95 -51.16 -0.41 0.24 16 35 H 0.04 0.86 8.27 -51.06 -0.42 0.43 16 36 H 0.02 0.48 7.67 -51.13 -0.39 0.09 16 37 H 0.05 1.24 7.51 -51.25 -0.38 0.86 16 38 H 0.02 0.63 8.15 -51.81 -0.42 0.21 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 275.90 15.07 4.16 4.16 Total: -1.00 -26.67 275.90 -8.04 -34.71 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.78 Total: -2.36 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -1.02 Total: -28.21 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.63 Total: -24.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.67 -8.04 -34.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260108605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.851 kcal (2) G-P(sol) polarization free energy of solvation -26.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds