Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.55215 * 1 3 3 C 1.53013 * 106.32132 * 2 1 4 4 C 1.51966 * 106.82424 * 241.38733 * 2 1 3 5 5 C 1.51985 * 114.26414 * 202.82156 * 4 2 1 6 6 H 1.11100 * 107.13055 * 170.37568 * 5 4 2 7 7 C 1.51221 * 112.93597 * 288.71161 * 5 4 2 8 8 C 1.50645 * 117.24455 * 87.63871 * 7 5 4 9 9 C 1.50713 * 119.13403 * 14.69496 * 8 7 5 10 10 C 1.51773 * 116.02901 * 342.02258 * 9 8 7 11 11 H 1.11107 * 107.30690 * 159.74273 * 10 9 8 12 12 C 1.51435 * 112.62251 * 277.85968 * 10 9 8 13 13 C 1.52421 * 110.05210 * 43.86103 * 10 9 8 14 14 C 1.50330 * 110.59964 * 173.00345 * 13 10 9 15 15 H 1.07998 * 119.99936 * 118.65959 * 14 13 10 16 16 C 1.37878 * 119.99774 * 298.66878 * 14 13 10 17 17 N 1.31518 * 120.00255 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47230 * 59.99548 * 18 16 14 20 20 H 1.48499 * 109.46924 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47163 * 299.99364 * 18 16 14 22 22 H 1.08999 * 109.47254 * 301.41530 * 1 2 3 23 23 H 1.09001 * 109.47065 * 61.41740 * 1 2 3 24 24 H 1.09005 * 109.47228 * 181.41557 * 1 2 3 25 25 H 1.09001 * 109.47244 * 167.62515 * 3 2 1 26 26 H 1.09003 * 109.47161 * 287.62496 * 3 2 1 27 27 H 1.09005 * 109.47482 * 47.62380 * 3 2 1 28 28 H 1.09629 * 109.30777 * 326.19706 * 4 2 1 29 29 H 1.10252 * 108.39069 * 81.73172 * 4 2 1 30 30 H 1.10833 * 108.12207 * 210.61506 * 7 5 4 31 31 H 1.10563 * 108.61055 * 323.65951 * 7 5 4 32 32 H 1.10388 * 109.63107 * 247.59658 * 8 7 5 33 33 H 1.11693 * 107.22499 * 136.51351 * 8 7 5 34 34 H 1.10342 * 109.24415 * 218.95951 * 9 8 7 35 35 H 1.10519 * 108.83332 * 104.20087 * 9 8 7 36 36 H 1.10389 * 108.52150 * 315.31075 * 12 10 9 37 37 H 1.10184 * 109.12466 * 200.71934 * 12 10 9 38 38 H 1.09218 * 109.55735 * 52.36315 * 13 10 9 39 39 H 0.97001 * 120.00016 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5522 0.0000 0.0000 3 6 1.9822 1.4685 0.0000 4 6 1.9920 -0.6966 -1.2770 5 6 3.3952 -1.2777 -1.2199 6 1 3.5282 -1.9019 -2.1293 7 6 4.4731 -0.2171 -1.2307 8 6 4.8917 0.3543 0.0989 9 6 4.4904 -0.3603 1.3637 10 6 3.3528 -1.3565 1.2335 11 1 3.4162 -2.0460 2.1025 12 6 1.9913 -0.6948 1.2753 13 6 3.5422 -2.2055 -0.0181 14 6 2.5198 -3.3063 -0.0703 15 1 1.8165 -3.3518 -0.8886 16 6 2.4799 -4.2579 0.9267 17 7 3.3366 -4.2027 1.9231 18 14 1.2090 -5.6254 0.8623 19 1 1.3950 -6.4159 -0.3809 20 1 1.3758 -6.5120 2.0418 21 1 -0.1538 -5.0356 0.8746 22 1 -0.3634 0.5356 0.8770 23 1 -0.3633 0.4917 -0.9024 24 1 -0.3634 -1.0274 0.0254 25 1 3.0476 1.5351 0.2202 26 1 1.7856 1.9046 -0.9794 27 1 1.4195 2.0119 0.7592 28 1 1.2740 -1.4872 -1.5244 29 1 1.9487 0.0320 -2.1033 30 1 5.3680 -0.6401 -1.7294 31 1 4.1490 0.6088 -1.8904 32 1 4.5836 1.4124 0.1613 33 1 6.0068 0.4180 0.0951 34 1 4.2190 0.3842 2.1315 35 1 5.3704 -0.8938 1.7666 36 1 1.9861 0.0451 2.0945 37 1 1.2332 -1.4458 1.5497 38 1 4.5438 -2.6410 -0.0164 39 1 3.3087 -4.8724 2.6243 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260108605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -48.064144 kcal Electronic energy + Delta-G solvation = -17017.872104 eV Core-core repulsion = 14730.100642 eV Total energy + Delta-G solvation = -2287.771462 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06611 -36.04092 -34.82301 -33.28605 -31.92996 -27.88082 -27.70472 -27.07255 -25.69946 -22.76293 -21.96726 -20.26470 -18.62279 -17.20904 -16.49602 -15.98307 -15.48838 -15.13328 -14.90923 -14.88991 -14.38825 -13.95622 -13.78427 -13.57673 -12.95785 -12.87388 -12.79997 -12.56050 -12.46736 -12.20900 -11.91541 -11.81188 -11.62451 -11.40543 -11.23777 -11.08184 -10.81996 -10.55512 -10.27417 -10.05366 -9.96847 -7.98988 -6.09184 1.40393 1.40616 1.47518 2.46602 3.27475 3.88323 3.97370 4.02489 4.16165 4.32444 4.37976 4.52154 4.66409 4.73841 4.84150 4.86191 4.90729 4.96782 5.01258 5.04237 5.16230 5.17108 5.20386 5.30298 5.33717 5.39633 5.47831 5.53160 5.59702 5.64227 5.67184 5.70156 5.80146 5.87494 6.05098 6.18919 6.36257 6.57522 7.02962 7.56193 9.04235 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.012404 C = 0.010722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.932431 B = 2256.875225 C = 2610.933149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.073 4.073 6 H 0.030 0.970 7 C -0.094 4.094 8 C -0.101 4.101 9 C -0.095 4.095 10 C -0.080 4.080 11 H 0.051 0.949 12 C -0.062 4.062 13 C 0.067 3.933 14 C -0.505 4.505 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.937 3.063 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.023 0.977 36 H 0.039 0.961 37 H 0.019 0.981 38 H -0.020 1.020 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 11.032 -3.741 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.203 4.203 4 C -0.112 4.112 5 C -0.092 4.092 6 H 0.048 0.952 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.133 4.133 10 C -0.099 4.099 11 H 0.070 0.930 12 C -0.100 4.100 13 C 0.048 3.952 14 C -0.543 4.543 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.559 5.559 18 Si 0.764 3.236 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.037 0.963 38 H -0.002 1.002 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.608 10.946 -3.585 11.630 hybrid contribution -0.513 -1.552 0.372 1.676 sum -2.121 9.394 -3.213 10.152 Atomic orbital electron populations 1.22520 0.95566 1.00318 1.01527 1.20183 0.94689 0.95513 0.94251 1.22227 1.02801 0.93594 1.01687 1.21166 0.95455 0.98339 0.96220 1.20597 0.94828 0.95780 0.97959 0.95170 1.20930 0.97503 0.98177 0.96539 1.20916 1.00011 0.99367 0.93505 1.21082 0.97562 0.97678 0.96990 1.20471 0.92912 0.95094 1.01434 0.93049 1.20915 0.96212 0.96896 0.95983 1.18178 0.93667 0.91470 0.91861 1.21341 1.16221 1.09809 1.06927 0.93367 1.25582 0.97416 0.99744 0.95605 1.69989 1.37828 1.35826 1.12259 0.85938 0.80415 0.80027 0.77262 1.19972 1.21386 1.19889 0.92640 0.91831 0.95020 0.91138 0.91973 0.92684 0.94536 0.92299 0.94144 0.91164 0.90554 0.93598 0.92795 0.95797 0.94281 0.96261 1.00171 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 7.68 72.74 0.56 -3.89 16 2 C -0.05 -1.58 0.63 -52.18 -0.03 -1.62 16 3 C -0.15 -3.97 7.95 71.99 0.57 -3.40 16 4 C -0.07 -2.72 3.78 29.92 0.11 -2.60 16 5 C -0.07 -2.97 2.11 -11.86 -0.03 -2.99 16 6 H 0.03 1.27 8.29 -1.25 -0.01 1.26 16 7 C -0.09 -3.13 4.76 29.25 0.14 -2.99 16 8 C -0.10 -3.22 4.47 29.09 0.13 -3.09 16 9 C -0.10 -3.68 4.94 29.45 0.15 -3.54 16 10 C -0.08 -3.70 2.02 -11.90 -0.02 -3.72 16 11 H 0.05 2.84 6.06 -1.25 -0.01 2.83 16 12 C -0.06 -2.58 3.80 29.66 0.11 -2.47 16 13 C 0.07 3.33 1.75 -12.00 -0.02 3.31 16 14 C -0.50 -27.74 7.38 25.48 0.19 -27.55 16 15 H 0.05 2.63 6.72 -2.91 -0.02 2.62 16 16 C 0.01 0.79 5.31 84.65 0.45 1.24 16 17 N -0.92 -54.12 11.33 21.45 0.24 -53.87 16 18 Si 0.94 44.66 29.54 68.60 2.03 46.68 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 22 H 0.05 1.57 8.05 -2.39 -0.02 1.56 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.03 1.11 7.94 -2.38 -0.02 1.09 16 25 H 0.07 1.91 3.59 -2.39 -0.01 1.91 16 26 H 0.06 1.46 7.74 -2.39 -0.02 1.44 16 27 H 0.05 1.36 7.95 -2.38 -0.02 1.34 16 28 H 0.04 1.47 6.60 -2.05 -0.01 1.45 16 29 H 0.06 1.81 7.53 -1.72 -0.01 1.79 16 30 H 0.04 1.32 8.29 -1.40 -0.01 1.31 16 31 H 0.07 1.94 7.97 -1.55 -0.01 1.93 16 32 H 0.08 2.03 6.06 -1.64 -0.01 2.02 16 33 H 0.05 1.35 8.34 -0.92 -0.01 1.34 16 34 H 0.05 1.86 7.95 -1.67 -0.01 1.85 16 35 H 0.02 0.97 8.27 -1.57 -0.01 0.96 16 36 H 0.04 1.46 7.67 -1.64 -0.01 1.45 16 37 H 0.02 0.89 7.51 -1.75 -0.01 0.87 16 38 H -0.02 -1.14 8.15 -2.27 -0.02 -1.16 16 39 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -59.85 275.90 5.65 -54.20 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.07 Total: 6.30 kcal Atomic # 6 Polarization: -55.62 SS G_CDS: 2.31 Total: -53.31 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.24 Total: -53.87 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -59.85 5.65 -54.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260108605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.141 kcal (2) G-P(sol) polarization free energy of solvation -59.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds