Wall clock time and date at job start Mon Mar 30 2020 03:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86802 * 120.00586 * 2 1 4 4 H 1.48499 * 109.46761 * 274.69613 * 3 2 1 5 5 H 1.48505 * 109.46761 * 34.69162 * 3 2 1 6 6 H 1.48492 * 109.47376 * 154.69478 * 3 2 1 7 7 C 1.40061 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99958 * 197.96491 * 7 2 1 9 9 C 1.41130 * 120.00153 * 17.96301 * 7 2 1 10 10 C 1.41173 * 119.98174 * 204.80517 * 9 7 2 11 11 C 1.35873 * 120.26425 * 179.97438 * 10 9 7 12 12 C 1.40259 * 120.13729 * 0.02595 * 11 10 9 13 13 C 1.46436 * 133.37631 * 179.97438 * 12 11 10 14 14 Cl 1.73596 * 126.26906 * 0.05194 * 13 12 11 15 15 N 1.30006 * 107.46501 * 180.02562 * 13 12 11 16 16 O 1.41337 * 109.77224 * 359.97438 * 15 13 12 17 17 C 1.34966 * 109.30715 * 0.02562 * 16 15 13 18 18 C 1.38264 * 133.20525 * 179.97438 * 17 16 15 19 19 H 0.97001 * 119.99334 * 0.02562 * 1 2 3 20 20 H 1.08005 * 119.86693 * 359.97438 * 10 9 7 21 21 H 1.07998 * 119.93140 * 180.02562 * 11 10 9 22 22 H 1.08003 * 120.20109 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.3900 2.1036 -1.3954 5 1 1.4923 2.6220 0.7969 6 1 3.5853 1.4134 0.5984 7 6 2.0078 -1.2130 -0.0005 8 1 3.0483 -1.2360 0.2879 9 6 1.3537 -2.4052 -0.3780 10 6 1.8276 -3.6492 0.0922 11 6 1.2019 -4.8005 -0.2672 12 6 0.0807 -4.7596 -1.1088 13 6 -0.7957 -5.7912 -1.6674 14 17 -0.6633 -7.5024 -1.4071 15 7 -1.6915 -5.1908 -2.3935 16 8 -1.4752 -3.7944 -2.3620 17 6 -0.4038 -3.5263 -1.5862 18 6 0.2311 -2.3534 -1.2216 19 1 -0.4849 0.8401 -0.0004 20 1 2.6909 -3.6858 0.7402 21 1 1.5688 -5.7491 0.0960 22 1 -0.1332 -1.4033 -1.5835 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125612.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:21 Heat of formation + Delta-G solvation = 26.033008 kcal Electronic energy + Delta-G solvation = -12354.255372 eV Core-core repulsion = 9901.647880 eV Total energy + Delta-G solvation = -2452.607493 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.19548 -38.52104 -38.16577 -35.61543 -34.03689 -31.46012 -30.77586 -27.52353 -23.82383 -22.99815 -22.61235 -19.57206 -18.10657 -17.97990 -16.80862 -16.63979 -15.81692 -15.45525 -14.65925 -14.38041 -13.85386 -13.77751 -13.48555 -13.15912 -12.84122 -12.68705 -12.32950 -11.91900 -11.89165 -11.60186 -11.48515 -11.15162 -9.60419 -9.29669 -8.86978 -6.61699 -0.03440 0.13085 0.86553 1.18597 1.41518 1.56458 1.57608 2.07448 2.14923 2.53158 3.45430 3.57291 4.04835 4.20880 4.72915 4.77707 4.92486 5.12149 5.22955 5.56799 5.66197 5.85838 5.91133 6.18432 6.48812 6.64261 6.71906 8.06751 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.061855 B = 0.007444 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.566552 B = 3760.383782 C = 4135.406649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.030 3.970 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.109 0.891 9 C 0.122 3.878 10 C -0.219 4.219 11 C -0.013 4.013 12 C -0.326 4.326 13 C 0.194 3.806 14 Cl 0.050 6.950 15 N -0.353 5.353 16 O -0.128 6.128 17 C 0.089 3.911 18 C -0.230 4.230 19 H 0.299 0.701 20 H 0.137 0.863 21 H 0.143 0.857 22 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -3.769 1.435 5.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.191 4.191 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.127 0.873 9 C 0.117 3.883 10 C -0.239 4.239 11 C -0.033 4.033 12 C -0.333 4.333 13 C -0.006 4.006 14 Cl 0.078 6.922 15 N -0.107 5.107 16 O -0.138 6.138 17 C 0.038 3.962 18 C -0.251 4.251 19 H 0.110 0.890 20 H 0.155 0.845 21 H 0.161 0.839 22 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.870 -3.841 0.678 4.843 hybrid contribution 0.330 0.553 0.302 0.711 sum 3.199 -3.288 0.980 4.691 Atomic orbital electron populations 1.69863 1.09789 1.32069 1.29629 1.27156 0.95472 1.05682 0.90750 0.84984 0.79498 0.74621 0.79561 1.18844 1.19218 1.16718 1.20288 0.99345 0.91349 1.35876 0.87306 1.17821 0.89393 0.94159 0.86930 1.21069 1.04684 0.91574 1.06531 1.20190 0.91245 0.99062 0.92784 1.19918 1.07400 0.88308 1.17717 1.25023 0.93136 0.88841 0.93614 1.98371 1.96963 1.02352 1.94560 1.79704 1.21398 0.85620 1.23948 1.88984 1.43628 1.18566 1.62603 1.20316 0.87717 0.96379 0.91766 1.20027 1.03444 0.93214 1.08448 0.88988 0.84525 0.83905 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.02 10.96 21.85 0.24 -37.78 14 2 C 0.03 1.33 5.13 85.30 0.44 1.77 14 3 Si 0.99 32.88 29.60 68.60 2.03 34.91 14 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 14 5 H -0.27 -8.55 7.11 99.48 0.71 -7.85 14 6 H -0.24 -7.54 7.11 99.48 0.71 -6.83 14 7 C -0.44 -20.48 9.03 23.42 0.21 -20.27 14 8 H 0.11 4.54 7.91 -2.91 -0.02 4.52 14 9 C 0.12 5.97 5.57 -21.29 -0.12 5.85 14 10 C -0.22 -9.33 9.70 22.44 0.22 -9.11 14 11 C -0.01 -0.53 10.02 22.21 0.22 -0.31 14 12 C -0.33 -14.92 6.36 -20.02 -0.13 -15.05 14 13 C 0.19 8.15 8.12 87.10 0.71 8.86 14 14 Cl 0.05 1.53 29.33 -2.72 -0.08 1.45 14 15 N -0.35 -16.50 12.82 -45.78 -0.59 -17.09 14 16 O -0.13 -6.69 12.07 28.42 0.34 -6.35 14 17 C 0.09 4.64 7.45 22.91 0.17 4.81 14 18 C -0.23 -12.14 8.70 22.83 0.20 -11.94 14 19 H 0.30 12.87 8.29 -92.71 -0.77 12.10 14 20 H 0.14 4.96 8.06 -2.91 -0.02 4.93 14 21 H 0.14 4.57 8.06 -2.91 -0.02 4.55 14 22 H 0.11 6.12 6.16 -2.91 -0.02 6.10 14 Total: -1.00 -55.86 224.68 5.13 -50.73 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.26 Total: 9.52 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 1.92 Total: -35.39 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.35 Total: -54.87 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.34 Total: -6.35 kcal Atomic # 14 Polarization: 32.88 SS G_CDS: 2.03 Total: 34.91 kcal Atomic # 17 Polarization: 1.53 SS G_CDS: -0.08 Total: 1.45 kcal Total: -55.86 5.13 -50.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125612.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.767 kcal (2) G-P(sol) polarization free energy of solvation -55.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds