Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86803 * 120.00292 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99924 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00201 * 3 2 1 7 7 C 1.38840 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.36984 * 120.00039 * 0.27510 * 7 2 1 10 10 C 1.38438 * 120.00164 * 179.72385 * 9 7 2 11 11 N 1.32551 * 119.38045 * 359.97438 * 10 9 7 12 12 C 1.31742 * 120.35022 * 179.97438 * 11 10 9 13 13 C 1.39848 * 120.02132 * 359.97438 * 12 11 10 14 14 C 1.37592 * 118.17380 * 0.02562 * 13 12 11 15 15 N 1.31995 * 119.38316 * 179.73074 * 10 9 7 16 16 C 1.52149 * 115.64740 * 179.97438 * 14 13 12 17 17 S 1.83280 * 103.49834 * 342.55384 * 16 14 13 18 18 C 1.52090 * 126.12560 * 179.97438 * 13 12 11 19 19 H 0.97000 * 119.99166 * 359.97438 * 1 2 3 20 20 H 0.97000 * 119.99538 * 359.72549 * 9 7 2 21 21 H 1.08003 * 119.98489 * 179.97438 * 12 11 10 22 22 H 1.08994 * 110.62063 * 224.05277 * 16 14 13 23 23 H 1.08997 * 110.62092 * 101.05157 * 16 14 13 24 24 H 1.08998 * 110.61839 * 315.96605 * 18 13 12 25 25 H 1.08996 * 110.62423 * 78.80837 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0096 -1.2024 -0.0005 8 1 3.0896 -1.2024 -0.0010 9 7 1.3246 -2.3887 -0.0068 10 6 2.0168 -3.5876 -0.0131 11 7 3.3422 -3.5734 -0.0135 12 6 4.0201 -4.7030 -0.0190 13 6 3.3418 -5.9260 -0.0238 14 6 1.9661 -5.9059 -0.0232 15 7 1.3445 -4.7235 -0.0136 16 6 1.2875 -7.2677 -0.0292 17 16 2.6183 -8.4063 -0.5692 18 6 3.9813 -7.3059 -0.0309 19 1 -0.4849 0.8401 0.0004 20 1 0.3546 -2.3886 -0.0068 21 1 5.1000 -4.6845 -0.0198 22 1 0.4599 -7.2810 -0.7382 23 1 0.9417 -7.5286 0.9710 24 1 4.8073 -7.3425 -0.7411 25 1 4.3235 -7.5756 0.9682 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260201843.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = 54.313568 kcal Electronic energy + Delta-G solvation = -12505.103118 eV Core-core repulsion = 10223.891514 eV Total energy + Delta-G solvation = -2281.211604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99593 -35.94943 -33.63843 -32.67266 -31.17244 -28.58466 -26.24483 -24.62109 -22.43604 -21.10378 -18.35497 -17.12023 -16.61030 -15.42758 -14.96570 -14.77694 -14.10967 -13.73318 -13.56033 -13.41208 -13.11357 -12.38743 -11.81651 -11.74869 -11.41350 -10.76910 -10.64068 -10.50826 -10.30607 -9.97100 -9.71182 -8.95566 -8.10420 -7.60880 -7.43965 -6.78410 -3.97163 1.86634 1.97670 2.14228 2.42702 3.08693 3.09841 3.11874 3.83899 4.31892 4.49287 4.72259 5.08369 5.21169 5.32959 5.48079 5.53030 5.62506 5.73395 6.10585 6.18216 6.50168 7.07881 7.26550 7.63476 8.03517 8.44207 8.83081 9.06354 9.64246 10.36808 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.071964 B = 0.006358 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.988167 B = 4402.787454 C = 4753.110909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.022 3.978 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.284 4.284 8 H 0.118 0.882 9 N -0.490 5.490 10 C 0.493 3.507 11 N -0.560 5.560 12 C 0.226 3.774 13 C -0.358 4.358 14 C 0.220 3.780 15 N -0.595 5.595 16 C -0.013 4.013 17 S -0.285 6.285 18 C 0.015 3.985 19 H 0.281 0.719 20 H 0.413 0.587 21 H 0.149 0.851 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 -8.535 0.536 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.415 4.415 8 H 0.136 0.864 9 N -0.098 5.098 10 C 0.138 3.862 11 N -0.283 5.283 12 C 0.047 3.953 13 C -0.374 4.374 14 C 0.067 3.933 15 N -0.323 5.323 16 C -0.162 4.162 17 S -0.058 6.058 18 C -0.134 4.134 19 H 0.091 0.909 20 H 0.250 0.750 21 H 0.166 0.834 22 H 0.131 0.869 23 H 0.125 0.875 24 H 0.114 0.886 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.075 -8.120 0.014 9.085 hybrid contribution 0.314 1.115 0.521 1.271 sum 4.390 -7.005 0.535 8.284 Atomic orbital electron populations 1.69685 1.06239 1.29437 1.46101 1.25530 0.95861 1.00485 0.96543 0.85685 0.78729 0.79113 0.79478 1.19373 1.20577 1.19384 1.20029 0.93968 0.81230 1.46311 0.86431 1.40614 1.08727 1.00771 1.59719 1.18782 0.85211 0.85633 0.96545 1.67894 1.07862 1.29197 1.23324 1.22361 0.99174 0.85774 0.87988 1.20844 0.95161 0.95339 1.26053 1.21134 0.90022 0.91899 0.90252 1.67077 1.41292 0.96654 1.27269 1.22648 0.98146 0.90104 1.05322 1.87504 1.04441 1.30620 1.83283 1.22246 0.96631 0.91297 1.03223 0.90921 0.75006 0.83372 0.86859 0.87465 0.88609 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.97 13.05 55.49 0.72 -22.24 15 2 C 0.02 0.54 5.50 -17.45 -0.10 0.45 15 3 Si 0.94 19.53 29.55 -169.99 -5.02 14.50 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.28 -7.41 9.69 -15.03 -0.15 -7.56 15 8 H 0.12 3.06 7.05 -52.49 -0.37 2.69 15 9 N -0.49 -12.64 5.43 -12.89 -0.07 -12.71 15 10 C 0.49 12.07 8.38 -323.33 -2.71 9.36 15 11 N -0.56 -12.87 9.12 -13.82 -0.13 -12.99 15 12 C 0.23 4.24 11.22 -16.99 -0.19 4.05 15 13 C -0.36 -6.36 5.95 -103.57 -0.62 -6.98 15 14 C 0.22 4.26 7.04 -81.35 -0.57 3.69 15 15 N -0.60 -13.59 10.44 -9.76 -0.10 -13.69 15 16 C -0.01 -0.21 7.39 36.72 0.27 0.07 15 17 S -0.28 -4.14 23.44 -107.50 -2.52 -6.66 15 18 C 0.02 0.21 7.33 36.69 0.27 0.48 15 19 H 0.28 6.87 8.31 -40.82 -0.34 6.53 15 20 H 0.41 10.77 8.01 -40.82 -0.33 10.45 15 21 H 0.15 2.16 8.06 -52.48 -0.42 1.74 15 22 H 0.11 1.65 8.14 -51.93 -0.42 1.22 15 23 H 0.11 1.47 8.14 -51.93 -0.42 1.04 15 24 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 238.86 15.07 3.60 3.60 Total: -1.00 -27.81 238.86 -9.25 -37.06 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -1.95 Total: 9.58 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.79 Total: 3.55 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.43 Total: -61.63 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.52 Total: -6.66 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.81 -9.25 -37.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260201843.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.375 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds