Wall clock time and date at job start Mon Mar 30 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53856 * 1 3 3 C 1.55047 * 106.10702 * 2 1 4 4 C 1.51532 * 109.50646 * 115.23435 * 2 1 3 5 5 C 1.52595 * 114.99728 * 99.29971 * 4 2 1 6 6 H 1.09819 * 112.26288 * 174.47746 * 5 4 2 7 7 C 1.54401 * 109.12423 * 298.81897 * 5 4 2 8 8 C 1.53907 * 105.90723 * 88.44582 * 7 5 4 9 9 C 1.54407 * 105.90638 * 0.02562 * 8 7 5 10 10 H 1.09812 * 111.66498 * 146.85167 * 9 8 7 11 11 C 1.51544 * 109.49817 * 244.77046 * 2 1 3 12 12 C 1.54947 * 107.48325 * 51.25795 * 5 4 2 13 13 C 1.52941 * 111.32285 * 167.75265 * 12 5 4 14 14 C 1.50695 * 109.46931 * 286.44054 * 13 12 5 15 15 H 1.08004 * 120.00546 * 0.27618 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 H 1.09001 * 109.46960 * 304.76355 * 1 2 3 23 23 H 1.09000 * 109.47314 * 64.76408 * 1 2 3 24 24 H 1.09001 * 109.47008 * 184.76918 * 1 2 3 25 25 H 1.09005 * 109.46849 * 176.88623 * 3 2 1 26 26 H 1.09002 * 109.46957 * 296.88160 * 3 2 1 27 27 H 1.08992 * 109.47509 * 56.88208 * 3 2 1 28 28 H 1.10241 * 108.80478 * 337.11520 * 4 2 1 29 29 H 1.10141 * 108.93672 * 221.79874 * 4 2 1 30 30 H 1.08753 * 110.75636 * 328.40915 * 7 5 4 31 31 H 1.09241 * 110.05268 * 207.16743 * 7 5 4 32 32 H 1.08758 * 110.66879 * 239.91951 * 8 7 5 33 33 H 1.09225 * 109.89214 * 118.83702 * 8 7 5 34 34 H 1.10152 * 108.93689 * 138.21938 * 11 2 1 35 35 H 1.10238 * 108.81322 * 22.89649 * 11 2 1 36 36 H 1.09020 * 111.15607 * 43.64414 * 12 5 4 37 37 H 1.08992 * 109.47257 * 166.44020 * 13 12 5 38 38 H 1.08997 * 109.46825 * 46.43653 * 13 12 5 39 39 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5386 0.0000 0.0000 3 6 1.9687 1.4896 0.0000 4 6 2.0445 -0.6089 1.2920 5 6 2.4705 -2.0708 1.1925 6 1 2.9187 -2.4381 2.1254 7 6 1.2553 -2.9242 0.7695 8 6 1.2550 -2.9241 -0.7696 9 6 2.4706 -2.0712 -1.1929 10 1 2.9184 -2.4386 -2.1259 11 6 2.0444 -0.6089 -1.2923 12 6 3.4524 -2.1894 -0.0003 13 6 4.1665 -3.5419 -0.0005 14 6 5.1966 -3.5661 1.0992 15 1 5.3255 -2.7045 1.7376 16 6 5.9702 -4.6906 1.2944 17 7 5.8096 -5.7418 0.5206 18 14 7.2477 -4.7204 2.6571 19 1 6.6280 -5.2336 3.9053 20 1 8.3721 -5.6063 2.2622 21 1 7.7583 -3.3451 2.8871 22 1 -0.3633 0.5860 0.8443 23 1 -0.3634 0.4381 -0.9296 24 1 -0.3633 -1.0241 0.0854 25 1 3.0554 1.5539 0.0558 26 1 1.6231 1.9676 -0.9166 27 1 1.5301 1.9945 0.8606 28 1 1.2570 -0.5215 2.0584 29 1 2.8960 -0.0139 1.6582 30 1 0.3319 -2.4969 1.1535 31 1 1.3671 -3.9453 1.1410 32 1 0.3315 -2.4966 -1.1533 33 1 1.3666 -3.9451 -1.1413 34 1 2.8961 -0.0140 -1.6584 35 1 1.2569 -0.5212 -2.0587 36 1 4.1721 -1.3706 -0.0004 37 1 4.6575 -3.6934 -0.9616 38 1 3.4393 -4.3367 0.1654 39 1 6.3541 -6.5327 0.6577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260231106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:05 Heat of formation + Delta-G solvation = -43.671003 kcal Electronic energy + Delta-G solvation = -16327.829808 eV Core-core repulsion = 14040.248848 eV Total energy + Delta-G solvation = -2287.580961 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10567 -35.06078 -32.73323 -30.84086 -29.73221 -27.81793 -26.74818 -24.70841 -23.85989 -21.76440 -19.47171 -19.23842 -17.35807 -16.10171 -15.34923 -14.50479 -14.21616 -13.82344 -13.68644 -13.14112 -12.92876 -12.49981 -12.12470 -11.94676 -11.63905 -11.49333 -11.29296 -11.14005 -11.06633 -10.84655 -10.70928 -10.46732 -10.08137 -9.83830 -9.74228 -9.71283 -9.58563 -9.32824 -8.87515 -8.74436 -8.25462 -5.92247 -3.92906 3.35344 3.41772 3.45079 4.51635 4.89218 5.00660 5.06086 5.39115 5.43313 5.48399 5.52800 5.66005 5.72757 5.80431 5.88002 5.93311 6.00173 6.12191 6.12652 6.19045 6.21109 6.28978 6.47436 6.48356 6.53173 6.59967 6.64253 6.67575 6.73482 6.90725 6.97212 7.09585 7.17807 7.36075 7.79538 7.97404 8.10860 8.54359 9.14485 9.70088 11.19079 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.040554 B = 0.007835 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.273930 B = 3572.915936 C = 3802.195017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C -0.146 4.146 4 C -0.096 4.096 5 C -0.080 4.080 6 H 0.085 0.915 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.092 4.092 10 H 0.072 0.928 11 C -0.093 4.093 12 C -0.070 4.070 13 C 0.031 3.969 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.012 0.988 38 H 0.019 0.981 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 10.184 -1.467 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.048 4.048 3 C -0.204 4.204 4 C -0.133 4.133 5 C -0.098 4.098 6 H 0.103 0.897 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.111 4.111 10 H 0.091 0.909 11 C -0.130 4.130 12 C -0.089 4.089 13 C -0.006 4.006 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.037 0.963 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.804 10.043 -1.499 14.114 hybrid contribution 0.742 -0.072 0.747 1.055 sum -9.062 9.971 -0.752 13.495 Atomic orbital electron populations 1.22344 0.95347 1.01812 1.00576 1.20251 0.94856 0.94478 0.95230 1.22576 1.01053 0.96045 1.00709 1.21501 0.99935 0.96811 0.95104 1.21987 0.95181 0.92579 1.00087 0.89712 1.22133 0.97368 1.00069 0.95488 1.22116 0.97173 0.99578 0.96050 1.22137 0.96179 0.93322 0.99422 0.90934 1.21479 0.99908 0.96315 0.95317 1.22263 0.94433 1.00524 0.91663 1.19027 0.94488 0.90507 0.96556 1.21268 1.18659 0.99558 1.15451 0.92831 1.25009 0.97411 0.95833 0.96252 1.69968 1.40659 1.04274 1.38801 0.86681 0.81492 0.77847 0.82501 1.20804 1.21354 1.19967 0.93409 0.93427 0.92118 0.92782 0.93360 0.93307 0.93430 0.92959 0.93034 0.92269 0.92994 0.92532 0.93030 0.93419 0.92275 0.96944 0.96276 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.61 37.60 0.29 -1.46 16 2 C -0.05 -0.66 0.62 -154.46 -0.10 -0.76 16 3 C -0.15 -1.80 7.54 38.24 0.29 -1.51 16 4 C -0.10 -1.49 4.16 -27.68 -0.12 -1.60 16 5 C -0.08 -1.48 3.30 -89.06 -0.29 -1.78 16 6 H 0.08 1.75 7.78 -51.46 -0.40 1.35 16 7 C -0.11 -1.93 5.14 -25.52 -0.13 -2.07 16 8 C -0.11 -1.85 5.32 -25.52 -0.14 -1.98 16 9 C -0.09 -1.61 3.37 -89.05 -0.30 -1.91 16 10 H 0.07 1.30 8.21 -51.47 -0.42 0.88 16 11 C -0.09 -1.37 4.15 -27.65 -0.11 -1.49 16 12 C -0.07 -1.45 2.10 -88.60 -0.19 -1.64 16 13 C 0.03 0.80 4.41 -27.92 -0.12 0.68 16 14 C -0.51 -14.40 8.59 -34.44 -0.30 -14.70 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 23 H 0.05 0.53 7.86 -51.93 -0.41 0.12 16 24 H 0.06 0.77 4.86 -51.93 -0.25 0.51 16 25 H 0.05 0.69 8.03 -51.93 -0.42 0.27 16 26 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.05 0.68 7.75 -51.22 -0.40 0.28 16 29 H 0.05 0.82 7.60 -51.28 -0.39 0.43 16 30 H 0.05 0.77 6.52 -52.07 -0.34 0.43 16 31 H 0.06 1.09 8.01 -51.79 -0.42 0.68 16 32 H 0.05 0.75 6.76 -52.06 -0.35 0.40 16 33 H 0.06 0.98 8.16 -51.80 -0.42 0.56 16 34 H 0.05 0.76 7.68 -51.27 -0.39 0.37 16 35 H 0.05 0.64 7.59 -51.22 -0.39 0.25 16 36 H 0.06 1.26 7.97 -51.92 -0.41 0.85 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.52 7.19 -51.93 -0.37 0.15 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -29.09 286.34 -8.29 -37.38 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -7.01 Total: -3.39 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -1.31 Total: -28.71 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.09 -8.29 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.289 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds