Wall clock time and date at job start Mon Mar 30 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53856 * 1 3 3 C 1.55047 * 106.10702 * 2 1 4 4 C 1.51532 * 109.50646 * 115.23435 * 2 1 3 5 5 C 1.52595 * 114.99728 * 99.29971 * 4 2 1 6 6 H 1.09819 * 112.26288 * 174.47746 * 5 4 2 7 7 C 1.54401 * 109.12423 * 298.81897 * 5 4 2 8 8 C 1.53907 * 105.90723 * 88.44582 * 7 5 4 9 9 C 1.54407 * 105.90638 * 0.02562 * 8 7 5 10 10 H 1.09812 * 111.66498 * 146.85167 * 9 8 7 11 11 C 1.51544 * 109.49817 * 244.77046 * 2 1 3 12 12 C 1.54947 * 107.48325 * 51.25795 * 5 4 2 13 13 C 1.52941 * 111.32285 * 167.75265 * 12 5 4 14 14 C 1.50695 * 109.46931 * 286.44054 * 13 12 5 15 15 H 1.08004 * 120.00546 * 0.27618 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 H 1.09001 * 109.46960 * 304.76355 * 1 2 3 23 23 H 1.09000 * 109.47314 * 64.76408 * 1 2 3 24 24 H 1.09001 * 109.47008 * 184.76918 * 1 2 3 25 25 H 1.09005 * 109.46849 * 176.88623 * 3 2 1 26 26 H 1.09002 * 109.46957 * 296.88160 * 3 2 1 27 27 H 1.08992 * 109.47509 * 56.88208 * 3 2 1 28 28 H 1.10241 * 108.80478 * 337.11520 * 4 2 1 29 29 H 1.10141 * 108.93672 * 221.79874 * 4 2 1 30 30 H 1.08753 * 110.75636 * 328.40915 * 7 5 4 31 31 H 1.09241 * 110.05268 * 207.16743 * 7 5 4 32 32 H 1.08758 * 110.66879 * 239.91951 * 8 7 5 33 33 H 1.09225 * 109.89214 * 118.83702 * 8 7 5 34 34 H 1.10152 * 108.93689 * 138.21938 * 11 2 1 35 35 H 1.10238 * 108.81322 * 22.89649 * 11 2 1 36 36 H 1.09020 * 111.15607 * 43.64414 * 12 5 4 37 37 H 1.08992 * 109.47257 * 166.44020 * 13 12 5 38 38 H 1.08997 * 109.46825 * 46.43653 * 13 12 5 39 39 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5386 0.0000 0.0000 3 6 1.9687 1.4896 0.0000 4 6 2.0445 -0.6089 1.2920 5 6 2.4705 -2.0708 1.1925 6 1 2.9187 -2.4381 2.1254 7 6 1.2553 -2.9242 0.7695 8 6 1.2550 -2.9241 -0.7696 9 6 2.4706 -2.0712 -1.1929 10 1 2.9184 -2.4386 -2.1259 11 6 2.0444 -0.6089 -1.2923 12 6 3.4524 -2.1894 -0.0003 13 6 4.1665 -3.5419 -0.0005 14 6 5.1966 -3.5661 1.0992 15 1 5.3255 -2.7045 1.7376 16 6 5.9702 -4.6906 1.2944 17 7 5.8096 -5.7418 0.5206 18 14 7.2477 -4.7204 2.6571 19 1 6.6280 -5.2336 3.9053 20 1 8.3721 -5.6063 2.2622 21 1 7.7583 -3.3451 2.8871 22 1 -0.3633 0.5860 0.8443 23 1 -0.3634 0.4381 -0.9296 24 1 -0.3633 -1.0241 0.0854 25 1 3.0554 1.5539 0.0558 26 1 1.6231 1.9676 -0.9166 27 1 1.5301 1.9945 0.8606 28 1 1.2570 -0.5215 2.0584 29 1 2.8960 -0.0139 1.6582 30 1 0.3319 -2.4969 1.1535 31 1 1.3671 -3.9453 1.1410 32 1 0.3315 -2.4966 -1.1533 33 1 1.3666 -3.9451 -1.1413 34 1 2.8961 -0.0140 -1.6584 35 1 1.2569 -0.5212 -2.0587 36 1 4.1721 -1.3706 -0.0004 37 1 4.6575 -3.6934 -0.9616 38 1 3.4393 -4.3367 0.1654 39 1 6.3541 -6.5327 0.6577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260231106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:05 Heat of formation + Delta-G solvation = -58.169887 kcal Electronic energy + Delta-G solvation = -16328.458527 eV Core-core repulsion = 14040.248848 eV Total energy + Delta-G solvation = -2288.209680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47205 -36.41680 -34.80659 -32.19316 -31.55665 -29.26751 -27.70093 -26.53589 -25.17641 -23.52966 -20.87442 -20.67000 -18.82158 -18.25027 -16.84386 -16.34116 -15.69438 -15.05223 -14.94420 -14.38490 -14.35832 -13.91897 -13.79380 -13.45242 -13.14254 -13.05354 -12.76170 -12.54123 -12.41932 -12.39775 -12.24480 -12.04604 -11.66797 -11.37775 -11.24057 -11.09598 -10.99008 -10.92293 -10.62802 -10.48363 -10.41811 -8.16704 -6.25842 1.37721 1.38929 1.49871 2.41309 3.15869 3.70111 3.71910 3.87358 4.09762 4.24619 4.27802 4.40301 4.55362 4.65385 4.77714 4.80926 4.87737 4.90077 4.92643 4.98237 5.02328 5.06997 5.11538 5.14591 5.17214 5.24329 5.35220 5.44391 5.45846 5.50926 5.54633 5.59407 5.64869 5.72834 5.75497 5.87802 5.96244 6.33473 6.91221 7.42065 8.95053 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.040554 B = 0.007835 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.273930 B = 3572.915936 C = 3802.195017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.091 4.091 5 C -0.080 4.080 6 H 0.054 0.946 7 C -0.109 4.109 8 C -0.107 4.107 9 C -0.090 4.090 10 H 0.060 0.940 11 C -0.089 4.089 12 C -0.071 4.071 13 C 0.040 3.960 14 C -0.528 4.528 15 H 0.055 0.945 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.265 1.265 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.047 0.953 37 H -0.022 1.022 38 H -0.006 1.006 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 12.190 -0.933 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.129 4.129 5 C -0.098 4.098 6 H 0.073 0.927 7 C -0.146 4.146 8 C -0.144 4.144 9 C -0.109 4.109 10 H 0.078 0.922 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.003 3.997 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.189 1.189 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.066 0.934 37 H -0.003 1.003 38 H 0.012 0.988 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.160 12.062 -0.964 16.461 hybrid contribution 1.191 -0.742 0.558 1.510 sum -9.969 11.320 -0.406 15.090 Atomic orbital electron populations 1.22309 0.93383 1.01998 1.02048 1.20250 0.96401 0.95163 0.93395 1.22519 1.00448 0.94896 1.02097 1.21459 1.00386 0.94002 0.97008 1.21903 0.94972 0.95419 0.97520 0.92742 1.22107 0.97998 0.98578 0.95946 1.22096 0.98107 0.98681 0.95538 1.22097 0.95499 0.96017 0.97264 0.92171 1.21456 1.00711 0.93684 0.96828 1.22098 0.95080 0.96677 0.95101 1.18869 0.93713 0.92950 0.94140 1.21650 1.19281 0.99712 1.15979 0.92692 1.25936 0.99726 0.95378 0.98857 1.70106 1.41874 1.04979 1.40666 0.85550 0.78575 0.78312 0.79259 1.19847 1.20790 1.18892 0.92139 0.91904 0.92515 0.93926 0.91865 0.92069 0.91548 0.93601 0.90009 0.94774 0.89760 0.94339 0.93209 0.91035 0.93430 1.00317 0.98777 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.61 72.27 0.55 -2.22 16 2 C -0.05 -1.27 0.62 -52.15 -0.03 -1.30 16 3 C -0.14 -3.01 7.54 72.68 0.55 -2.46 16 4 C -0.09 -2.65 4.16 29.98 0.12 -2.52 16 5 C -0.08 -2.96 3.30 -9.79 -0.03 -2.99 16 6 H 0.05 2.32 7.78 -1.95 -0.02 2.31 16 7 C -0.11 -3.66 5.14 31.38 0.16 -3.50 16 8 C -0.11 -3.44 5.32 31.38 0.17 -3.27 16 9 C -0.09 -3.14 3.37 -9.78 -0.03 -3.17 16 10 H 0.06 2.21 8.21 -1.95 -0.02 2.19 16 11 C -0.09 -2.43 4.15 30.00 0.12 -2.30 16 12 C -0.07 -3.02 2.10 -9.49 -0.02 -3.04 16 13 C 0.04 2.19 4.41 29.83 0.13 2.33 16 14 C -0.53 -30.89 8.59 25.60 0.22 -30.67 16 15 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 17 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 18 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 H 0.06 1.06 8.05 -2.39 -0.02 1.04 16 23 H 0.06 1.07 7.86 -2.39 -0.02 1.05 16 24 H 0.06 1.17 4.86 -2.39 -0.01 1.15 16 25 H 0.04 0.99 8.03 -2.38 -0.02 0.97 16 26 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 27 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 28 H 0.07 1.69 7.75 -1.72 -0.01 1.68 16 29 H 0.05 1.38 7.60 -1.78 -0.01 1.36 16 30 H 0.08 2.25 6.52 -2.52 -0.02 2.24 16 31 H 0.03 1.29 8.01 -2.26 -0.02 1.27 16 32 H 0.08 2.19 6.76 -2.51 -0.02 2.17 16 33 H 0.04 1.36 8.16 -2.27 -0.02 1.34 16 34 H 0.05 1.37 7.68 -1.77 -0.01 1.35 16 35 H 0.07 1.64 7.59 -1.72 -0.01 1.63 16 36 H 0.05 2.10 7.97 -2.38 -0.02 2.08 16 37 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 38 H -0.01 -0.36 7.19 -2.39 -0.02 -0.38 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -64.64 286.34 5.69 -58.95 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.01 Total: 6.51 kcal Atomic # 6 Polarization: -57.15 SS G_CDS: 2.37 Total: -54.78 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.28 Total: -58.29 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -64.64 5.69 -58.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.779 kcal (2) G-P(sol) polarization free energy of solvation -64.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds