Wall clock time and date at job start Mon Mar 30 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86790 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47395 * 274.97850 * 3 2 1 5 5 H 1.48505 * 109.47367 * 34.97877 * 3 2 1 6 6 H 1.48501 * 109.47481 * 154.97737 * 3 2 1 7 7 C 1.39093 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99935 * 185.97275 * 7 2 1 9 9 N 1.36407 * 120.00097 * 5.98243 * 7 2 1 10 10 O 1.41339 * 125.58513 * 354.04023 * 9 7 2 11 11 C 1.34993 * 109.79949 * 179.97438 * 10 9 7 12 12 C 1.39000 * 132.55701 * 180.28889 * 11 10 9 13 13 C 1.37863 * 120.04741 * 180.11678 * 12 11 10 14 14 C 1.38909 * 120.58602 * 359.58972 * 13 12 11 15 15 F 1.35101 * 119.87778 * 180.20776 * 14 13 12 16 16 C 1.37902 * 120.23477 * 0.18386 * 14 13 12 17 17 C 1.39649 * 119.69344 * 0.02562 * 16 14 13 18 18 C 1.34963 * 125.58720 * 174.01060 * 9 7 2 19 19 O 1.21801 * 126.67699 * 0.02763 * 18 9 7 20 20 H 0.97000 * 120.00320 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.97749 * 359.95413 * 12 11 10 22 22 H 1.08003 * 119.70552 * 179.77633 * 13 12 11 23 23 H 1.08004 * 120.15258 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.3897 2.1072 -1.3948 5 1 1.5014 2.6200 0.8026 6 1 3.5936 1.4121 0.5922 7 6 2.0088 -1.2046 0.0005 8 1 3.0844 -1.2071 0.0979 9 7 1.3323 -2.3827 -0.1221 10 8 -0.0737 -2.5261 -0.1371 11 6 -0.3990 -3.8292 -0.2732 12 6 -1.6193 -4.4906 -0.3476 13 6 -1.6538 -5.8618 -0.4868 14 6 -0.4761 -6.5944 -0.5627 15 9 -0.5267 -7.9372 -0.7033 16 6 0.7444 -5.9560 -0.4955 17 6 0.7919 -4.5679 -0.3501 18 6 1.8959 -3.6024 -0.2494 19 8 3.0873 -3.8542 -0.2756 20 1 -0.4850 0.8400 -0.0004 21 1 -2.5410 -3.9303 -0.2936 22 1 -2.6051 -6.3705 -0.5404 23 1 1.6593 -6.5270 -0.5551 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260334549.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:17 Heat of formation + Delta-G solvation = -33.142548 kcal Electronic energy + Delta-G solvation = -14560.868698 eV Core-core repulsion = 11677.358785 eV Total energy + Delta-G solvation = -2883.509913 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 223.043 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.86597 -42.65366 -38.85166 -38.29061 -35.67699 -33.28567 -32.20670 -30.63346 -27.89532 -24.67147 -23.74462 -22.04941 -20.72623 -19.08750 -18.19559 -17.52582 -17.40095 -17.03065 -16.46803 -16.12111 -15.87825 -15.53741 -14.95094 -14.61910 -14.34020 -13.91689 -13.54486 -13.35462 -13.01409 -12.77089 -12.45173 -12.11602 -11.63584 -10.79853 -10.49085 -10.23433 -9.25543 -8.71635 -6.34299 -0.33638 0.07332 0.77925 1.33342 1.40103 1.56130 1.73540 2.16815 2.48668 2.72243 2.91099 3.27325 3.48921 3.76043 4.01559 4.22924 4.33953 4.86599 4.96282 4.97871 5.01824 5.12385 5.48502 5.75397 6.07926 6.56959 6.85420 7.43562 8.37653 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.056943 B = 0.008117 C = 0.007128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.599245 B = 3448.858397 C = 3927.497449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.001 3.999 3 Si 1.019 2.981 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.355 4.355 8 H 0.136 0.864 9 N -0.280 5.280 10 O -0.033 6.033 11 C 0.046 3.954 12 C -0.090 4.090 13 C -0.077 4.077 14 C 0.062 3.938 15 F -0.134 7.134 16 C -0.071 4.071 17 C -0.217 4.217 18 C 0.434 3.566 19 O -0.608 6.608 20 H 0.289 0.711 21 H 0.175 0.825 22 H 0.197 0.803 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 -5.390 -0.718 8.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.207 4.207 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.477 4.477 8 H 0.153 0.847 9 N -0.039 5.039 10 O -0.025 6.025 11 C -0.006 4.006 12 C -0.109 4.109 13 C -0.097 4.097 14 C 0.043 3.957 15 F -0.112 7.112 16 C -0.092 4.092 17 C -0.222 4.222 18 C 0.229 3.771 19 O -0.499 6.499 20 H 0.099 0.901 21 H 0.192 0.808 22 H 0.214 0.786 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.687 -5.029 -0.682 8.395 hybrid contribution 0.529 0.471 0.054 0.710 sum -6.159 -4.558 -0.628 7.688 Atomic orbital electron populations 1.69984 1.07613 1.30588 1.40960 1.26649 0.96787 1.03547 0.93676 0.84561 0.78167 0.74078 0.79445 1.18616 1.18602 1.18084 1.20421 0.92328 0.80348 1.54642 0.84663 1.46357 0.90601 1.07933 1.59050 1.89306 1.07126 1.20946 1.85129 1.20826 0.96605 0.84333 0.98839 1.20202 0.93894 0.93431 1.03385 1.21354 0.98799 0.91937 0.97572 1.17241 0.93686 0.77589 1.07196 1.91499 1.97196 1.28814 1.93712 1.20485 0.98783 0.91238 0.98665 1.20395 0.93680 0.95373 1.12770 1.18195 0.88672 0.82496 0.87719 1.90661 1.16097 1.80991 1.62131 0.90059 0.80767 0.78601 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.37 11.90 21.69 0.26 -45.11 14 2 C 0.00 0.06 5.50 84.97 0.47 0.52 14 3 Si 1.02 38.86 29.56 68.60 2.03 40.89 14 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 14 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 14 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 7 C -0.35 -20.01 10.05 84.19 0.85 -19.16 14 8 H 0.14 7.55 7.81 -2.91 -0.02 7.53 14 9 N -0.28 -15.99 3.84 -310.28 -1.19 -17.18 14 10 O -0.03 -1.73 9.86 28.14 0.28 -1.45 14 11 C 0.05 1.98 7.43 22.97 0.17 2.15 14 12 C -0.09 -2.66 10.06 22.36 0.22 -2.43 14 13 C -0.08 -1.85 9.99 22.34 0.22 -1.62 14 14 C 0.06 1.81 7.29 22.35 0.16 1.98 14 15 F -0.13 -3.58 17.26 44.97 0.78 -2.80 14 16 C -0.07 -2.61 10.08 22.53 0.23 -2.38 14 17 C -0.22 -9.86 6.33 -20.12 -0.13 -9.99 14 18 C 0.43 24.21 8.14 86.51 0.70 24.91 14 19 O -0.61 -36.75 17.86 -4.67 -0.08 -36.84 14 20 H 0.29 13.77 8.31 -92.71 -0.77 13.00 14 21 H 0.17 4.00 8.06 -2.91 -0.02 3.98 14 22 H 0.20 2.71 8.06 -2.91 -0.02 2.69 14 23 H 0.14 4.99 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -68.93 226.75 6.22 -62.70 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.26 Total: 5.81 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 2.90 Total: -6.02 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.93 Total: -62.30 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: 0.19 Total: -38.29 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -68.93 6.22 -62.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334549.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.562 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds