Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.39873 * 125.89670 * 324.71413 * 12 2 1 14 14 C 1.35318 * 107.91699 * 179.86574 * 13 12 2 15 15 C 1.50704 * 126.12216 * 180.14808 * 14 13 12 16 16 C 1.53002 * 109.46889 * 185.26472 * 15 14 13 17 17 C 1.52990 * 109.47227 * 305.26353 * 15 14 13 18 18 C 1.53000 * 109.47238 * 65.27030 * 15 14 13 19 19 N 1.34948 * 107.74904 * 0.39349 * 14 13 12 20 20 H 0.96993 * 126.03947 * 179.75141 * 19 14 13 21 21 N 1.30830 * 125.89935 * 145.02511 * 12 2 1 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 26 26 H 1.07996 * 126.03985 * 359.97438 * 13 12 2 27 27 H 1.09008 * 109.46842 * 59.99812 * 16 15 14 28 28 H 1.08990 * 109.47336 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47314 * 300.00570 * 16 15 14 30 30 H 1.09003 * 109.46915 * 60.00426 * 17 15 14 31 31 H 1.08996 * 109.47473 * 180.02562 * 17 15 14 32 32 H 1.09002 * 109.47576 * 300.00574 * 17 15 14 33 33 H 1.08994 * 109.47394 * 59.99444 * 18 15 14 34 34 H 1.08996 * 109.46967 * 180.02562 * 18 15 14 35 35 H 1.09003 * 109.46963 * 299.99611 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 6 1.4337 -1.8178 -1.8400 14 6 2.1825 -2.1569 -2.9149 15 6 1.9071 -3.2919 -3.8672 16 6 3.0617 -3.4131 -4.8638 17 6 1.7737 -4.5971 -3.0801 18 6 0.6063 -3.0179 -4.6247 19 7 3.2230 -1.2999 -2.9782 20 1 3.9270 -1.3053 -3.6453 21 7 3.1068 -0.4011 -1.9100 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8912 -0.5369 4.4374 26 1 0.5321 -2.3136 -1.5118 27 1 3.9884 -3.6082 -4.3241 28 1 2.8627 -4.2342 -5.5523 29 1 3.1567 -2.4832 -5.4245 30 1 0.9511 -4.5107 -2.3702 31 1 1.5750 -5.4181 -3.7689 32 1 2.7004 -4.7923 -2.5405 33 1 0.7013 -2.0881 -5.1854 34 1 0.4069 -3.8391 -5.3131 35 1 -0.2163 -2.9316 -3.9147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260440430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 53.916495 kcal Electronic energy + Delta-G solvation = -15386.042076 eV Core-core repulsion = 12999.152483 eV Total energy + Delta-G solvation = -2386.889593 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78216 -36.66682 -34.43390 -31.65445 -29.59014 -28.89049 -27.26077 -27.09023 -25.00661 -22.34375 -21.90152 -19.01342 -18.21423 -16.89942 -16.46720 -14.82692 -14.53239 -14.35517 -13.82377 -13.47177 -13.21722 -12.86851 -12.67443 -12.30891 -12.26857 -12.12524 -11.74320 -11.32823 -11.21629 -11.03118 -10.87061 -10.81386 -10.36962 -10.14499 -9.64334 -9.48494 -9.18472 -8.50791 -8.31723 -7.89886 -6.01455 -4.00478 2.52442 3.32077 3.43220 3.45840 3.47914 3.67224 4.45978 4.60712 4.76671 4.89504 5.26781 5.29350 5.44671 5.56793 5.58975 5.67547 5.76670 5.86083 5.89844 5.99908 6.15946 6.26518 6.31070 6.42574 6.47714 6.53567 6.70747 6.80847 7.03946 7.42421 7.49980 7.76164 7.91791 8.55322 8.57798 9.02776 9.58788 11.11759 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.007122 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.163986 B = 3930.789107 C = 3953.437286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.901 5.901 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.265 1.265 12 C 0.135 3.865 13 C -0.253 4.253 14 C 0.079 3.921 15 C -0.002 4.002 16 C -0.151 4.151 17 C -0.136 4.136 18 C -0.135 4.135 19 N -0.491 5.491 20 H 0.426 0.574 21 N -0.309 5.309 22 H 0.031 0.969 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.264 0.736 26 H 0.139 0.861 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 -4.918 -16.091 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.057 3.943 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.190 1.190 12 C -0.032 4.032 13 C -0.282 4.282 14 C -0.049 4.049 15 C -0.004 4.004 16 C -0.208 4.208 17 C -0.194 4.194 18 C -0.193 4.193 19 N -0.198 5.198 20 H 0.268 0.732 21 N -0.131 5.131 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.157 0.843 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.612 -4.123 -15.980 16.582 hybrid contribution -0.802 0.145 0.006 0.815 sum -2.414 -3.978 -15.974 16.638 Atomic orbital electron populations 1.22109 0.97964 1.01145 0.98694 1.17766 0.91703 0.95919 0.88940 0.94079 1.20795 1.31844 1.13530 0.87808 0.90790 1.24949 0.95815 0.96636 0.95640 1.69889 1.45781 1.40344 0.97871 0.86845 0.80530 0.83840 0.76986 1.20486 1.22496 1.19017 1.22647 0.90972 0.94388 0.95212 1.21037 1.05241 1.02958 0.98966 1.20783 0.91173 0.94524 0.98411 1.19160 0.96182 0.92059 0.92973 1.21952 0.97965 1.02084 0.98842 1.21862 1.02971 0.94743 0.99849 1.21856 0.96155 1.01360 0.99928 1.46267 1.22373 1.25697 1.25457 0.73186 1.77352 1.21296 1.14453 0.99977 0.94953 0.92420 0.93857 0.92632 0.84307 0.92312 0.91596 0.92607 0.91548 0.92314 0.92328 0.92673 0.92237 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.27 37.16 0.31 -2.82 16 2 C 0.08 1.94 2.35 -92.92 -0.22 1.72 16 3 H 0.04 1.07 7.21 -51.93 -0.37 0.69 16 4 C -0.50 -14.58 9.13 -34.44 -0.31 -14.89 16 5 H 0.07 2.38 7.98 -52.49 -0.42 1.96 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 8 Si 0.89 22.22 24.37 -169.99 -4.14 18.07 16 9 H -0.28 -6.67 6.86 56.52 0.39 -6.28 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.13 3.09 6.06 -82.41 -0.50 2.59 16 13 C -0.25 -4.95 9.30 -40.01 -0.37 -5.32 16 14 C 0.08 1.30 5.60 -82.26 -0.46 0.84 16 15 C 0.00 -0.02 0.93 -155.66 -0.15 -0.17 16 16 C -0.15 -1.44 7.57 37.16 0.28 -1.16 16 17 C -0.14 -1.57 8.30 37.15 0.31 -1.26 16 18 C -0.14 -1.41 8.40 37.16 0.31 -1.10 16 19 N -0.49 -8.49 7.10 33.48 0.24 -8.26 16 20 H 0.43 5.82 7.98 -182.61 -1.46 4.37 16 21 N -0.31 -6.88 12.70 33.67 0.43 -6.45 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.21 7.31 -51.93 -0.38 0.83 16 24 H 0.04 0.98 3.25 -51.93 -0.17 0.81 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.14 2.56 7.42 -52.49 -0.39 2.17 16 27 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.50 7.93 -51.93 -0.41 0.09 16 30 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 280.38 15.07 4.23 4.23 Total: -1.00 -32.55 280.38 -5.95 -38.50 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.57 Total: 0.67 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -0.90 Total: -19.58 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 1.44 Total: -41.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.55 -5.95 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.415 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds