Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.39873 * 125.89670 * 324.71413 * 12 2 1 14 14 C 1.35318 * 107.91699 * 179.86574 * 13 12 2 15 15 C 1.50704 * 126.12216 * 180.14808 * 14 13 12 16 16 C 1.53002 * 109.46889 * 185.26472 * 15 14 13 17 17 C 1.52990 * 109.47227 * 305.26353 * 15 14 13 18 18 C 1.53000 * 109.47238 * 65.27030 * 15 14 13 19 19 N 1.34948 * 107.74904 * 0.39349 * 14 13 12 20 20 H 0.96993 * 126.03947 * 179.75141 * 19 14 13 21 21 N 1.30830 * 125.89935 * 145.02511 * 12 2 1 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 26 26 H 1.07996 * 126.03985 * 359.97438 * 13 12 2 27 27 H 1.09008 * 109.46842 * 59.99812 * 16 15 14 28 28 H 1.08990 * 109.47336 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47314 * 300.00570 * 16 15 14 30 30 H 1.09003 * 109.46915 * 60.00426 * 17 15 14 31 31 H 1.08996 * 109.47473 * 180.02562 * 17 15 14 32 32 H 1.09002 * 109.47576 * 300.00574 * 17 15 14 33 33 H 1.08994 * 109.47394 * 59.99444 * 18 15 14 34 34 H 1.08996 * 109.46967 * 180.02562 * 18 15 14 35 35 H 1.09003 * 109.46963 * 299.99611 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 6 1.4337 -1.8178 -1.8400 14 6 2.1825 -2.1569 -2.9149 15 6 1.9071 -3.2919 -3.8672 16 6 3.0617 -3.4131 -4.8638 17 6 1.7737 -4.5971 -3.0801 18 6 0.6063 -3.0179 -4.6247 19 7 3.2230 -1.2999 -2.9782 20 1 3.9270 -1.3053 -3.6453 21 7 3.1068 -0.4011 -1.9100 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8912 -0.5369 4.4374 26 1 0.5321 -2.3136 -1.5118 27 1 3.9884 -3.6082 -4.3241 28 1 2.8627 -4.2342 -5.5523 29 1 3.1567 -2.4832 -5.4245 30 1 0.9511 -4.5107 -2.3702 31 1 1.5750 -5.4181 -3.7689 32 1 2.7004 -4.7923 -2.5405 33 1 0.7013 -2.0881 -5.1854 34 1 0.4069 -3.8391 -5.3131 35 1 -0.2163 -2.9316 -3.9147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 31.616888 kcal Electronic energy + Delta-G solvation = -15387.009059 eV Core-core repulsion = 12999.152483 eV Total energy + Delta-G solvation = -2387.856576 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.26229 -37.78722 -36.30478 -33.74766 -31.22113 -30.31858 -28.10097 -27.98575 -27.09438 -24.20550 -23.17916 -20.37078 -19.93695 -18.76518 -18.01633 -16.78173 -15.79517 -15.62539 -14.99989 -14.83867 -14.78710 -14.61644 -14.12728 -14.03276 -13.20370 -13.10743 -12.99610 -12.94219 -12.57475 -12.47715 -12.27217 -11.91624 -11.84711 -11.69557 -11.41553 -11.37565 -11.19091 -10.72673 -9.99843 -9.39419 -8.28934 -6.33994 1.06614 1.33163 1.40181 1.51109 2.01823 2.10494 2.34524 3.05600 3.53810 3.83288 3.97073 4.03770 4.32692 4.52115 4.62181 4.69022 4.78606 4.82760 4.87934 4.88672 4.94575 4.99956 5.02715 5.09716 5.15866 5.17236 5.28885 5.44088 5.45158 5.60984 5.65853 5.81773 6.29652 6.59804 6.69182 6.95196 7.29482 8.88265 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.007122 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.163986 B = 3930.789107 C = 3953.437286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 H 0.028 0.972 4 C -0.508 4.508 5 H 0.023 0.977 6 C 0.015 3.985 7 N -0.949 5.949 8 Si 0.954 3.046 9 H -0.255 1.255 10 H -0.297 1.297 11 H -0.251 1.251 12 C 0.106 3.894 13 C -0.280 4.280 14 C 0.107 3.893 15 C -0.002 4.002 16 C -0.150 4.150 17 C -0.137 4.137 18 C -0.133 4.133 19 N -0.476 5.476 20 H 0.442 0.558 21 N -0.348 5.348 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.268 0.732 26 H 0.144 0.856 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -5.014 -18.629 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.057 3.943 3 H 0.046 0.954 4 C -0.547 4.547 5 H 0.041 0.959 6 C -0.182 4.182 7 N -0.589 5.589 8 Si 0.780 3.220 9 H -0.180 1.180 10 H -0.224 1.224 11 H -0.175 1.175 12 C -0.060 4.060 13 C -0.309 4.309 14 C -0.023 4.023 15 C -0.004 4.004 16 C -0.207 4.207 17 C -0.195 4.195 18 C -0.190 4.190 19 N -0.184 5.184 20 H 0.288 0.712 21 N -0.171 5.171 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.162 0.838 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.960 -4.220 -18.545 19.248 hybrid contribution -0.253 0.044 0.711 0.756 sum -3.214 -4.176 -17.833 18.596 Atomic orbital electron populations 1.21988 0.95383 1.01944 0.99873 1.17622 0.93793 0.94675 0.88221 0.95443 1.20945 1.31220 1.12283 0.90212 0.95889 1.25855 0.97306 1.00142 0.94935 1.70042 1.47645 1.42550 0.98634 0.85774 0.79432 0.79536 0.77262 1.18043 1.22426 1.17463 1.22502 0.92126 0.95973 0.95361 1.21150 1.06482 1.02898 1.00364 1.21471 0.89038 0.94195 0.97614 1.19403 0.98256 0.90039 0.92662 1.21974 0.96515 1.03670 0.98568 1.21884 1.01741 0.95597 1.00244 1.21854 0.94609 1.02600 0.99974 1.46225 1.22930 1.24746 1.24533 0.71178 1.77213 1.21531 1.16670 1.01733 0.91936 0.91928 0.94247 0.92322 0.83777 0.92781 0.88916 0.91821 0.92785 0.89043 0.93840 0.92707 0.89266 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.27 71.98 0.60 -5.17 16 2 C 0.08 3.94 2.35 -12.29 -0.03 3.91 16 3 H 0.03 1.44 7.21 -2.38 -0.02 1.43 16 4 C -0.51 -30.77 9.13 25.60 0.23 -30.53 16 5 H 0.02 1.57 7.98 -2.91 -0.02 1.54 16 6 C 0.01 0.88 5.45 84.65 0.46 1.34 16 7 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 8 Si 0.95 45.84 24.37 68.60 1.67 47.51 16 9 H -0.25 -11.28 6.86 99.48 0.68 -10.60 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 12 C 0.11 4.95 6.06 43.10 0.26 5.21 16 13 C -0.28 -10.95 9.30 21.99 0.20 -10.74 16 14 C 0.11 3.36 5.60 41.41 0.23 3.59 16 15 C 0.00 -0.03 0.93 -52.93 -0.05 -0.08 16 16 C -0.15 -2.32 7.57 71.98 0.55 -1.77 16 17 C -0.14 -2.83 8.30 71.98 0.60 -2.24 16 18 C -0.13 -2.31 8.40 71.98 0.60 -1.71 16 19 N -0.48 -16.02 7.10 -48.00 -0.34 -16.37 16 20 H 0.44 11.39 7.98 -213.33 -1.70 9.69 16 21 N -0.35 -15.69 12.70 -47.38 -0.60 -16.29 16 22 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 23 H 0.06 2.58 7.31 -2.39 -0.02 2.56 16 24 H 0.04 1.70 3.25 -2.38 -0.01 1.69 16 25 H 0.27 15.96 8.31 -92.71 -0.77 15.18 16 26 H 0.14 5.32 7.42 -2.91 -0.02 5.30 16 27 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 30 H 0.05 1.25 7.91 -2.39 -0.02 1.23 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -73.61 280.38 3.97 -69.64 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.71 Total: 14.25 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.66 Total: -38.18 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -0.64 Total: -93.22 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -73.61 3.97 -69.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.253 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds