Wall clock time and date at job start Mon Mar 30 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47240 * 240.00363 * 3 2 1 5 5 H 1.48504 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47400 * 120.00442 * 3 2 1 7 7 C 1.37875 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99853 * 359.72751 * 7 2 1 10 10 H 1.09005 * 109.46494 * 305.65025 * 9 7 2 11 11 C 1.53000 * 109.47475 * 65.65059 * 9 7 2 12 12 C 1.52998 * 109.47239 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47128 * 300.00432 * 12 11 9 14 14 C 1.53000 * 109.47413 * 59.99675 * 13 12 11 15 15 C 1.52998 * 109.47239 * 300.00257 * 14 13 12 16 16 H 1.08998 * 109.47439 * 300.00086 * 15 14 13 17 17 C 1.52993 * 109.47141 * 179.97438 * 15 14 13 18 18 C 1.54268 * 110.03240 * 62.59259 * 17 15 14 19 19 C 1.54962 * 104.15901 * 217.13633 * 18 17 15 20 20 C 1.54892 * 102.77865 * 37.88642 * 19 18 17 21 21 C 1.53870 * 110.03354 * 305.37268 * 17 15 14 22 22 H 0.96994 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47304 * 300.00463 * 11 9 7 24 24 H 1.09002 * 109.46566 * 60.00478 * 11 9 7 25 25 H 1.09001 * 109.47159 * 180.02562 * 12 11 9 26 26 H 1.08997 * 109.46971 * 60.00155 * 12 11 9 27 27 H 1.09007 * 109.46442 * 299.99756 * 13 12 11 28 28 H 1.08997 * 109.47231 * 180.02562 * 13 12 11 29 29 H 1.08999 * 109.47304 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.46566 * 60.00000 * 14 13 12 31 31 H 1.09002 * 110.01827 * 183.98249 * 17 15 14 32 32 H 1.09000 * 110.48421 * 335.78239 * 18 17 15 33 33 H 1.09004 * 110.48884 * 98.42362 * 18 17 15 34 34 H 1.08997 * 110.72002 * 279.57121 * 19 18 17 35 35 H 1.09002 * 110.92015 * 156.29350 * 19 18 17 36 36 H 1.09000 * 110.48287 * 203.40331 * 20 19 18 37 37 H 1.09001 * 110.59407 * 80.81888 * 20 19 18 38 38 H 1.09000 * 110.03793 * 238.56454 * 21 17 15 39 39 H 1.08997 * 110.03304 * 359.95167 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0051 10 1 0.5542 -2.5126 0.8431 11 6 0.4756 -2.6461 -1.3056 12 6 -0.2898 -3.9708 -1.2996 13 6 0.6986 -5.1303 -1.1589 14 6 1.4741 -4.9833 0.1518 15 6 2.2395 -3.6586 0.1457 16 1 2.9365 -3.6454 -0.6922 17 6 3.0144 -3.5114 1.4566 18 6 4.0606 -4.6383 1.5815 19 6 4.0554 -4.9949 3.0895 20 6 2.5572 -4.8764 3.4645 21 6 2.0592 -3.6623 2.6534 22 1 -0.4850 0.8400 0.0004 23 1 -0.2288 -1.8203 -1.4056 24 1 1.1726 -2.6326 -2.1435 25 1 -0.8419 -4.0757 -2.2335 26 1 -0.9867 -3.9839 -0.4616 27 1 1.3955 -5.1171 -1.9970 28 1 0.1533 -6.0741 -1.1551 29 1 2.1785 -5.8091 0.2517 30 1 0.7770 -4.9964 0.9897 31 1 3.5066 -2.5395 1.4920 32 1 3.7649 -5.5011 0.9846 33 1 5.0443 -4.2812 1.2764 34 1 4.6531 -4.2813 3.6566 35 1 4.4146 -6.0114 3.2503 36 1 2.4448 -4.6935 4.5331 37 1 2.0168 -5.7772 3.1736 38 1 2.0884 -2.7641 3.2702 39 1 1.0434 -3.8396 2.3003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458345.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:28 Heat of formation + Delta-G solvation = -47.485396 kcal Electronic energy + Delta-G solvation = -16401.039017 eV Core-core repulsion = 14113.292651 eV Total energy + Delta-G solvation = -2287.746365 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00950 -36.06053 -32.77200 -30.85443 -29.36853 -28.16652 -26.43931 -24.51921 -21.79546 -20.92133 -20.08581 -19.08550 -17.67205 -16.19391 -15.40125 -14.65127 -14.56359 -13.77184 -13.26317 -13.19932 -12.84272 -12.55554 -12.15660 -11.70974 -11.36340 -10.98134 -10.81541 -10.69744 -10.63942 -10.51871 -10.42935 -10.33174 -10.04508 -10.02977 -9.82782 -9.65833 -9.53129 -9.16527 -8.56985 -8.40658 -8.18958 -5.90450 -3.93502 3.35674 3.40520 3.43203 4.50552 5.14358 5.21193 5.28393 5.40429 5.61913 5.71911 5.76486 5.97195 6.04391 6.07853 6.10793 6.22534 6.29573 6.31344 6.34064 6.46633 6.49969 6.53748 6.59520 6.68780 6.74080 6.80687 6.87922 6.94734 7.02154 7.19577 7.23852 7.34003 7.42179 7.62116 7.84397 8.14340 8.19584 8.57833 9.10541 9.69648 11.16906 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.011312 C = 0.008525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.714715 B = 2474.560688 C = 3283.591632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.031 0.969 11 C -0.107 4.107 12 C -0.119 4.119 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.070 4.070 16 H 0.051 0.949 17 C -0.075 4.075 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.115 4.115 22 H 0.258 0.742 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -9.165 2.650 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.049 0.951 11 C -0.145 4.145 12 C -0.157 4.157 13 C -0.152 4.152 14 C -0.151 4.151 15 C -0.088 4.088 16 H 0.069 0.931 17 C -0.094 4.094 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.152 4.152 22 H 0.068 0.932 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.412 -9.028 2.650 10.008 hybrid contribution 0.449 1.013 -0.053 1.109 sum 3.861 -8.015 2.597 9.268 Atomic orbital electron populations 1.69907 1.05777 1.26218 1.51175 1.24939 0.94744 0.98723 0.95529 0.86811 0.79707 0.83869 0.78485 1.20465 1.21498 1.20443 1.21171 0.92689 0.90707 1.49706 0.92914 1.18670 0.92752 0.91017 0.93720 0.95068 1.21582 0.99015 0.94646 0.99306 1.21618 0.97659 0.96873 0.99508 1.21507 0.98204 0.97440 0.98018 1.21706 0.98477 0.97933 0.97007 1.21194 0.97258 0.94926 0.95433 0.93071 1.21679 0.94702 0.98078 0.94901 1.22586 0.99060 0.99343 0.95409 1.22473 0.96674 0.99958 0.96993 1.22384 0.95787 0.98976 0.99061 1.22180 1.00078 0.96624 0.96322 0.93213 0.90287 0.94995 0.94332 0.93121 0.93035 0.93981 0.93597 0.92400 0.90310 0.91776 0.92761 0.92145 0.92764 0.92801 0.92380 0.92535 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 11.74 55.43 0.65 -24.85 16 2 C 0.06 1.69 5.33 -17.82 -0.09 1.59 16 3 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -13.50 7.60 -34.44 -0.26 -13.77 16 8 H 0.05 1.41 6.96 -52.49 -0.37 1.04 16 9 C 0.06 1.37 1.34 -91.77 -0.12 1.24 16 10 H 0.03 0.83 6.82 -51.93 -0.35 0.48 16 11 C -0.11 -2.52 5.03 -26.73 -0.13 -2.66 16 12 C -0.12 -2.33 5.92 -26.73 -0.16 -2.49 16 13 C -0.11 -1.98 5.92 -26.73 -0.16 -2.14 16 14 C -0.11 -2.01 4.65 -26.73 -0.12 -2.13 16 15 C -0.07 -1.40 1.44 -90.62 -0.13 -1.53 16 16 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.08 -1.41 2.54 -89.51 -0.23 -1.63 16 18 C -0.13 -1.97 6.20 -25.03 -0.16 -2.12 16 19 C -0.12 -1.71 6.91 -24.70 -0.17 -1.88 16 20 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 21 C -0.11 -2.05 5.39 -25.62 -0.14 -2.19 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.08 2.09 6.52 -51.93 -0.34 1.75 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.73 6.22 -51.93 -0.32 0.41 16 30 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 31 H 0.08 1.66 6.66 -51.93 -0.35 1.31 16 32 H 0.06 0.97 5.91 -51.93 -0.31 0.66 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.33 4.98 -51.93 -0.26 1.07 16 LS Contribution 283.95 15.07 4.28 4.28 Total: -1.00 -27.07 283.95 -8.96 -36.03 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.82 Total: -0.13 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -2.05 Total: -31.69 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.65 Total: -24.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.07 -8.96 -36.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458345.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.452 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds