Wall clock time and date at job start Mon Mar 30 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47240 * 240.00363 * 3 2 1 5 5 H 1.48504 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47400 * 120.00442 * 3 2 1 7 7 C 1.37875 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99853 * 359.72751 * 7 2 1 10 10 H 1.09005 * 109.46494 * 305.65025 * 9 7 2 11 11 C 1.53000 * 109.47475 * 65.65059 * 9 7 2 12 12 C 1.52998 * 109.47239 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47128 * 300.00432 * 12 11 9 14 14 C 1.53000 * 109.47413 * 59.99675 * 13 12 11 15 15 C 1.52998 * 109.47239 * 300.00257 * 14 13 12 16 16 H 1.08998 * 109.47439 * 300.00086 * 15 14 13 17 17 C 1.52993 * 109.47141 * 179.97438 * 15 14 13 18 18 C 1.54268 * 110.03240 * 62.59259 * 17 15 14 19 19 C 1.54962 * 104.15901 * 217.13633 * 18 17 15 20 20 C 1.54892 * 102.77865 * 37.88642 * 19 18 17 21 21 C 1.53870 * 110.03354 * 305.37268 * 17 15 14 22 22 H 0.96994 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47304 * 300.00463 * 11 9 7 24 24 H 1.09002 * 109.46566 * 60.00478 * 11 9 7 25 25 H 1.09001 * 109.47159 * 180.02562 * 12 11 9 26 26 H 1.08997 * 109.46971 * 60.00155 * 12 11 9 27 27 H 1.09007 * 109.46442 * 299.99756 * 13 12 11 28 28 H 1.08997 * 109.47231 * 180.02562 * 13 12 11 29 29 H 1.08999 * 109.47304 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.46566 * 60.00000 * 14 13 12 31 31 H 1.09002 * 110.01827 * 183.98249 * 17 15 14 32 32 H 1.09000 * 110.48421 * 335.78239 * 18 17 15 33 33 H 1.09004 * 110.48884 * 98.42362 * 18 17 15 34 34 H 1.08997 * 110.72002 * 279.57121 * 19 18 17 35 35 H 1.09002 * 110.92015 * 156.29350 * 19 18 17 36 36 H 1.09000 * 110.48287 * 203.40331 * 20 19 18 37 37 H 1.09001 * 110.59407 * 80.81888 * 20 19 18 38 38 H 1.09000 * 110.03793 * 238.56454 * 21 17 15 39 39 H 1.08997 * 110.03304 * 359.95167 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0051 10 1 0.5542 -2.5126 0.8431 11 6 0.4756 -2.6461 -1.3056 12 6 -0.2898 -3.9708 -1.2996 13 6 0.6986 -5.1303 -1.1589 14 6 1.4741 -4.9833 0.1518 15 6 2.2395 -3.6586 0.1457 16 1 2.9365 -3.6454 -0.6922 17 6 3.0144 -3.5114 1.4566 18 6 4.0606 -4.6383 1.5815 19 6 4.0554 -4.9949 3.0895 20 6 2.5572 -4.8764 3.4645 21 6 2.0592 -3.6623 2.6534 22 1 -0.4850 0.8400 0.0004 23 1 -0.2288 -1.8203 -1.4056 24 1 1.1726 -2.6326 -2.1435 25 1 -0.8419 -4.0757 -2.2335 26 1 -0.9867 -3.9839 -0.4616 27 1 1.3955 -5.1171 -1.9970 28 1 0.1533 -6.0741 -1.1551 29 1 2.1785 -5.8091 0.2517 30 1 0.7770 -4.9964 0.9897 31 1 3.5066 -2.5395 1.4920 32 1 3.7649 -5.5011 0.9846 33 1 5.0443 -4.2812 1.2764 34 1 4.6531 -4.2813 3.6566 35 1 4.4146 -6.0114 3.2503 36 1 2.4448 -4.6935 4.5331 37 1 2.0168 -5.7772 3.1736 38 1 2.0884 -2.7641 3.2702 39 1 1.0434 -3.8396 2.3003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458345.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:27 Heat of formation + Delta-G solvation = -59.761095 kcal Electronic energy + Delta-G solvation = -16401.571331 eV Core-core repulsion = 14113.292651 eV Total energy + Delta-G solvation = -2288.278680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53608 -37.54125 -34.77046 -32.38420 -31.16840 -29.45897 -27.97204 -26.44896 -23.36284 -22.56959 -21.36350 -20.68958 -19.26562 -18.24371 -16.81413 -16.49432 -15.99407 -15.36894 -14.77006 -14.66553 -14.56871 -14.01459 -13.87434 -13.35159 -13.05356 -12.85378 -12.55966 -12.38626 -12.07092 -11.96469 -11.81349 -11.75366 -11.69633 -11.57083 -11.39169 -11.20463 -11.16148 -10.89479 -10.41761 -10.19847 -10.17667 -8.03574 -6.12579 1.39242 1.39474 1.46708 2.45096 3.24830 3.86043 3.94107 4.00142 4.17278 4.28349 4.32540 4.60702 4.68782 4.72378 4.79005 4.90791 4.91754 4.94696 4.98583 5.00173 5.04130 5.12039 5.16587 5.22661 5.31870 5.36356 5.41993 5.45766 5.55398 5.57244 5.60128 5.68398 5.74302 5.80735 5.84079 6.17560 6.24122 6.51325 7.00705 7.53249 9.02209 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.011312 C = 0.008525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.714715 B = 2474.560688 C = 3283.591632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.047 0.953 9 C 0.058 3.942 10 H -0.002 1.002 11 C -0.105 4.105 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.108 4.108 15 C -0.064 4.064 16 H 0.041 0.959 17 C -0.078 4.078 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.115 4.115 22 H 0.256 0.744 23 H 0.041 0.959 24 H 0.024 0.976 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 -11.368 2.939 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.040 3.960 10 H 0.017 0.983 11 C -0.143 4.143 12 C -0.151 4.151 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.083 4.083 16 H 0.060 0.940 17 C -0.096 4.096 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.153 4.153 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.581 -11.236 2.940 12.485 hybrid contribution 0.069 1.751 -0.153 1.759 sum 4.650 -9.485 2.786 10.925 Atomic orbital electron populations 1.70045 1.07010 1.26667 1.52325 1.25649 0.95509 1.01876 0.95621 0.85895 0.78588 0.80230 0.78640 1.19881 1.21277 1.19944 1.21537 0.92649 0.92306 1.48825 0.93475 1.18591 0.92891 0.91857 0.92687 0.98338 1.21443 0.98345 0.95898 0.98596 1.21536 0.97869 0.95669 1.00073 1.21494 0.97819 0.97513 0.97907 1.21655 0.98702 0.96908 0.97238 1.21067 0.96399 0.94938 0.95869 0.94039 1.21620 0.95559 0.97947 0.94510 1.22531 0.97904 0.98142 0.97185 1.22464 0.96007 1.01643 0.95328 1.22347 0.96396 0.97492 0.99186 1.22134 0.99187 0.97636 0.96315 0.93474 0.94021 0.95695 0.92698 0.93916 0.92477 0.90744 0.90724 0.92703 0.93769 0.90518 0.92335 0.92093 0.89908 0.91529 0.90965 0.94724 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 11.74 21.45 0.25 -54.49 16 2 C 0.01 0.63 5.33 84.65 0.45 1.08 16 3 Si 0.94 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.51 -28.59 7.60 25.60 0.19 -28.40 16 8 H 0.05 2.60 6.96 -2.91 -0.02 2.58 16 9 C 0.06 2.89 1.34 -11.54 -0.02 2.88 16 10 H 0.00 -0.08 6.82 -2.38 -0.02 -0.10 16 11 C -0.10 -5.05 5.03 30.59 0.15 -4.90 16 12 C -0.11 -4.39 5.92 30.59 0.18 -4.21 16 13 C -0.11 -3.51 5.92 30.60 0.18 -3.33 16 14 C -0.11 -3.56 4.65 30.59 0.14 -3.41 16 15 C -0.06 -2.58 1.44 -10.80 -0.02 -2.59 16 16 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 17 C -0.08 -2.90 2.54 -10.07 -0.03 -2.92 16 18 C -0.12 -3.43 6.20 31.69 0.20 -3.24 16 19 C -0.12 -2.84 6.91 31.91 0.22 -2.62 16 20 C -0.12 -3.10 6.83 31.67 0.22 -2.88 16 21 C -0.12 -4.11 5.39 31.32 0.17 -3.95 16 22 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.04 2.29 6.52 -2.39 -0.02 2.28 16 24 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 2.07 6.22 -2.39 -0.01 2.05 16 30 H 0.05 1.86 6.16 -2.39 -0.01 1.85 16 31 H 0.04 1.92 6.66 -2.39 -0.02 1.90 16 32 H 0.08 2.01 5.91 -2.39 -0.01 1.99 16 33 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 2.05 4.98 -2.39 -0.01 2.04 16 Total: -1.00 -60.39 283.95 5.32 -55.06 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.99 Total: 10.93 kcal Atomic # 6 Polarization: -60.53 SS G_CDS: 2.05 Total: -58.48 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.25 Total: -54.49 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -60.39 5.32 -55.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458345.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.697 kcal (2) G-P(sol) polarization free energy of solvation -60.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds