Wall clock time and date at job start Mon Mar 30 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47303 * 269.99849 * 3 2 1 5 5 H 1.48508 * 109.47158 * 150.00328 * 3 2 1 6 6 H 1.48492 * 109.47343 * 30.00067 * 3 2 1 7 7 C 1.37878 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99870 * 173.40807 * 7 2 1 9 9 C 1.50696 * 119.99826 * 353.40437 * 7 2 1 10 10 H 1.08996 * 109.47437 * 327.98701 * 9 7 2 11 11 C 1.53002 * 109.47442 * 87.98889 * 9 7 2 12 12 C 1.53007 * 109.46964 * 59.99555 * 11 9 7 13 13 C 1.52998 * 109.46879 * 60.00387 * 12 11 9 14 14 C 1.52997 * 109.47308 * 299.99702 * 13 12 11 15 15 C 1.53002 * 109.47224 * 60.00422 * 14 13 12 16 16 H 1.08998 * 109.47252 * 59.99731 * 15 14 13 17 17 C 1.52996 * 109.47549 * 180.02562 * 15 14 13 18 18 C 1.54273 * 110.02666 * 297.90446 * 17 15 14 19 19 C 1.54969 * 104.15918 * 217.13760 * 18 17 15 20 20 C 1.54891 * 102.77660 * 37.88456 * 19 18 17 21 21 C 1.53873 * 110.03520 * 180.69061 * 17 15 14 22 22 H 0.97002 * 119.99947 * 174.56700 * 1 2 3 23 23 H 1.08995 * 109.47174 * 179.97438 * 11 9 7 24 24 H 1.08996 * 109.46854 * 299.99925 * 11 9 7 25 25 H 1.08998 * 109.47323 * 300.00453 * 12 11 9 26 26 H 1.08995 * 109.46977 * 180.02562 * 12 11 9 27 27 H 1.08996 * 109.46852 * 180.02562 * 13 12 11 28 28 H 1.08998 * 109.47089 * 59.99923 * 13 12 11 29 29 H 1.08998 * 109.47226 * 300.00137 * 14 13 12 30 30 H 1.09004 * 109.47371 * 180.02562 * 14 13 12 31 31 H 1.08997 * 110.01966 * 59.29244 * 17 15 14 32 32 H 1.08993 * 110.48715 * 335.78105 * 18 17 15 33 33 H 1.08998 * 110.48573 * 98.42896 * 18 17 15 34 34 H 1.09002 * 110.71967 * 279.57669 * 19 18 17 35 35 H 1.08996 * 110.92148 * 156.29599 * 19 18 17 36 36 H 1.08996 * 110.48668 * 203.40206 * 20 19 18 37 37 H 1.09004 * 110.47804 * 80.76555 * 20 19 18 38 38 H 1.08997 * 110.03188 * 238.56571 * 21 17 15 39 39 H 1.09004 * 110.02802 * 359.94524 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 3.5467 1.4402 0.7000 6 1 1.4466 2.6526 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1971 -0.1079 9 6 1.2585 -2.4948 0.1488 10 1 0.3807 -2.3404 0.7762 11 6 0.8189 -2.9919 -1.2298 12 6 2.0511 -3.2088 -2.1106 13 6 2.9654 -4.2494 -1.4610 14 6 3.4050 -3.7524 -0.0824 15 6 2.1729 -3.5356 0.7984 16 1 1.6333 -4.4764 0.9064 17 6 2.6124 -3.0380 2.1768 18 6 3.4933 -4.1006 2.8659 19 6 3.0873 -4.0192 4.3592 20 6 1.5592 -3.7769 4.2860 21 6 1.3834 -2.8319 3.0794 22 1 -0.4850 -0.8363 -0.0795 23 1 0.2797 -3.9330 -1.1218 24 1 0.1675 -2.2506 -1.6926 25 1 2.5907 -2.2679 -2.2186 26 1 1.7379 -3.5624 -3.0928 27 1 3.8434 -4.4036 -2.0881 28 1 2.4258 -5.1903 -1.3530 29 1 3.9446 -2.8116 -0.1904 30 1 4.0568 -4.4936 0.3803 31 1 3.1638 -2.1030 2.0777 32 1 3.2789 -5.0916 2.4660 33 1 4.5491 -3.8588 2.7431 34 1 3.5876 -3.1843 4.8500 35 1 3.3059 -4.9550 4.8736 36 1 1.2045 -3.2995 5.1994 37 1 1.0320 -4.7156 4.1155 38 1 1.3388 -1.7972 3.4190 39 1 0.4737 -3.0855 2.5351 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:30 Heat of formation + Delta-G solvation = -52.434278 kcal Electronic energy + Delta-G solvation = -16493.106311 eV Core-core repulsion = 14205.145346 eV Total energy + Delta-G solvation = -2287.960965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.93103 -36.37710 -32.73094 -30.89120 -29.39299 -27.97849 -26.42101 -24.24327 -21.54773 -21.42921 -19.90616 -18.95776 -18.67844 -15.87878 -15.33748 -14.89303 -14.30351 -13.69307 -13.32835 -13.06759 -12.84141 -12.70164 -12.19057 -11.85242 -11.46793 -10.86138 -10.76903 -10.74621 -10.64889 -10.49366 -10.32743 -10.31451 -10.22957 -10.05141 -9.93785 -9.72228 -9.56111 -8.97875 -8.67260 -8.23126 -8.09642 -6.20863 -3.89208 3.47394 3.50252 3.65295 4.61075 5.13384 5.20421 5.25477 5.47548 5.63586 5.70891 5.78157 5.93547 6.03115 6.08719 6.12977 6.21325 6.26483 6.30892 6.33529 6.42041 6.48338 6.52349 6.56273 6.66972 6.68916 6.70699 6.79678 6.92014 6.97687 7.09751 7.12162 7.32935 7.35560 7.41913 7.60709 7.75994 8.42819 8.59974 9.02894 9.79950 11.16822 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.012421 C = 0.009444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.514769 B = 2253.700182 C = 2964.117637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.019 3.981 3 Si 1.057 2.943 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.570 4.570 8 H 0.050 0.950 9 C 0.032 3.968 10 H 0.032 0.968 11 C -0.108 4.108 12 C -0.104 4.104 13 C -0.111 4.111 14 C -0.105 4.105 15 C -0.060 4.060 16 H 0.036 0.964 17 C -0.071 4.071 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.111 4.111 22 H 0.270 0.730 23 H 0.020 0.980 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -7.526 3.709 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.887 3.113 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.609 4.609 8 H 0.068 0.932 9 C 0.014 3.986 10 H 0.051 0.949 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.079 4.079 16 H 0.054 0.946 17 C -0.089 4.089 18 C -0.159 4.159 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.149 4.149 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.940 -5.866 3.783 8.552 hybrid contribution 0.169 -1.634 -0.200 1.655 sum 5.109 -7.500 3.583 9.757 Atomic orbital electron populations 1.70738 1.06920 1.30800 1.47074 1.25601 0.96512 1.02091 0.94255 0.83717 0.74946 0.76129 0.76502 1.21880 1.21631 1.21234 1.21870 0.94377 0.91378 1.53238 0.93231 1.18948 0.94894 0.93652 0.91141 0.94946 1.21650 0.95968 0.97432 0.99562 1.21360 0.97423 0.99045 0.96337 1.21448 0.98299 0.98144 0.96929 1.21511 0.97823 1.00304 0.94611 1.21107 0.95979 0.97315 0.93476 0.94589 1.21632 0.95072 0.98163 0.94043 1.22514 0.99229 0.99550 0.94588 1.22491 0.96287 1.00325 0.97085 1.22391 0.95889 0.99481 0.98541 1.22104 0.99015 0.98782 0.94970 0.91917 0.96143 0.93277 0.91086 0.94961 0.93829 0.93713 0.91317 0.94366 0.90161 0.92384 0.92619 0.92028 0.92719 0.92654 0.92497 0.92241 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 13.55 55.43 0.75 -26.28 16 2 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 3 Si 1.06 24.99 29.91 -169.99 -5.08 19.91 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.57 -14.78 5.50 -34.44 -0.19 -14.97 16 8 H 0.05 1.30 6.07 -52.49 -0.32 0.98 16 9 C 0.03 0.76 1.50 -91.77 -0.14 0.62 16 10 H 0.03 0.84 5.38 -51.93 -0.28 0.56 16 11 C -0.11 -2.43 5.34 -26.73 -0.14 -2.57 16 12 C -0.10 -2.11 5.70 -26.73 -0.15 -2.26 16 13 C -0.11 -2.00 5.92 -26.73 -0.16 -2.16 16 14 C -0.11 -1.98 4.78 -26.73 -0.13 -2.11 16 15 C -0.06 -1.21 1.24 -90.61 -0.11 -1.32 16 16 H 0.04 0.72 8.13 -51.93 -0.42 0.29 16 17 C -0.07 -1.35 2.22 -89.50 -0.20 -1.54 16 18 C -0.12 -1.91 5.31 -25.03 -0.13 -2.05 16 19 C -0.12 -1.77 6.91 -24.69 -0.17 -1.94 16 20 C -0.13 -1.91 6.83 -25.07 -0.17 -2.08 16 21 C -0.11 -2.08 5.92 -25.62 -0.15 -2.23 16 22 H 0.27 7.92 6.34 -40.82 -0.26 7.66 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 1.21 7.65 -51.93 -0.40 0.81 16 25 H 0.07 1.57 7.22 -51.93 -0.37 1.20 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.41 6.29 -51.93 -0.33 1.09 16 30 H 0.04 0.64 7.22 -51.93 -0.38 0.27 16 31 H 0.08 1.72 7.28 -51.93 -0.38 1.34 16 32 H 0.06 0.90 7.72 -51.93 -0.40 0.49 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.26 6.38 -51.93 -0.33 0.93 16 LS Contribution 284.50 15.07 4.29 4.29 Total: -1.00 -27.32 284.50 -8.87 -36.19 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.89 Total: 0.10 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: -1.94 Total: -34.20 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.75 Total: -26.28 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.32 -8.87 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.243 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds