Wall clock time and date at job start Mon Mar 30 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47303 * 269.99849 * 3 2 1 5 5 H 1.48508 * 109.47158 * 150.00328 * 3 2 1 6 6 H 1.48492 * 109.47343 * 30.00067 * 3 2 1 7 7 C 1.37878 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99870 * 173.40807 * 7 2 1 9 9 C 1.50696 * 119.99826 * 353.40437 * 7 2 1 10 10 H 1.08996 * 109.47437 * 327.98701 * 9 7 2 11 11 C 1.53002 * 109.47442 * 87.98889 * 9 7 2 12 12 C 1.53007 * 109.46964 * 59.99555 * 11 9 7 13 13 C 1.52998 * 109.46879 * 60.00387 * 12 11 9 14 14 C 1.52997 * 109.47308 * 299.99702 * 13 12 11 15 15 C 1.53002 * 109.47224 * 60.00422 * 14 13 12 16 16 H 1.08998 * 109.47252 * 59.99731 * 15 14 13 17 17 C 1.52996 * 109.47549 * 180.02562 * 15 14 13 18 18 C 1.54273 * 110.02666 * 297.90446 * 17 15 14 19 19 C 1.54969 * 104.15918 * 217.13760 * 18 17 15 20 20 C 1.54891 * 102.77660 * 37.88456 * 19 18 17 21 21 C 1.53873 * 110.03520 * 180.69061 * 17 15 14 22 22 H 0.97002 * 119.99947 * 174.56700 * 1 2 3 23 23 H 1.08995 * 109.47174 * 179.97438 * 11 9 7 24 24 H 1.08996 * 109.46854 * 299.99925 * 11 9 7 25 25 H 1.08998 * 109.47323 * 300.00453 * 12 11 9 26 26 H 1.08995 * 109.46977 * 180.02562 * 12 11 9 27 27 H 1.08996 * 109.46852 * 180.02562 * 13 12 11 28 28 H 1.08998 * 109.47089 * 59.99923 * 13 12 11 29 29 H 1.08998 * 109.47226 * 300.00137 * 14 13 12 30 30 H 1.09004 * 109.47371 * 180.02562 * 14 13 12 31 31 H 1.08997 * 110.01966 * 59.29244 * 17 15 14 32 32 H 1.08993 * 110.48715 * 335.78105 * 18 17 15 33 33 H 1.08998 * 110.48573 * 98.42896 * 18 17 15 34 34 H 1.09002 * 110.71967 * 279.57669 * 19 18 17 35 35 H 1.08996 * 110.92148 * 156.29599 * 19 18 17 36 36 H 1.08996 * 110.48668 * 203.40206 * 20 19 18 37 37 H 1.09004 * 110.47804 * 80.76555 * 20 19 18 38 38 H 1.08997 * 110.03188 * 238.56571 * 21 17 15 39 39 H 1.09004 * 110.02802 * 359.94524 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 3.5467 1.4402 0.7000 6 1 1.4466 2.6526 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1971 -0.1079 9 6 1.2585 -2.4948 0.1488 10 1 0.3807 -2.3404 0.7762 11 6 0.8189 -2.9919 -1.2298 12 6 2.0511 -3.2088 -2.1106 13 6 2.9654 -4.2494 -1.4610 14 6 3.4050 -3.7524 -0.0824 15 6 2.1729 -3.5356 0.7984 16 1 1.6333 -4.4764 0.9064 17 6 2.6124 -3.0380 2.1768 18 6 3.4933 -4.1006 2.8659 19 6 3.0873 -4.0192 4.3592 20 6 1.5592 -3.7769 4.2860 21 6 1.3834 -2.8319 3.0794 22 1 -0.4850 -0.8363 -0.0795 23 1 0.2797 -3.9330 -1.1218 24 1 0.1675 -2.2506 -1.6926 25 1 2.5907 -2.2679 -2.2186 26 1 1.7379 -3.5624 -3.0928 27 1 3.8434 -4.4036 -2.0881 28 1 2.4258 -5.1903 -1.3530 29 1 3.9446 -2.8116 -0.1904 30 1 4.0568 -4.4936 0.3803 31 1 3.1638 -2.1030 2.0777 32 1 3.2789 -5.0916 2.4660 33 1 4.5491 -3.8588 2.7431 34 1 3.5876 -3.1843 4.8500 35 1 3.3059 -4.9550 4.8736 36 1 1.2045 -3.2995 5.1994 37 1 1.0320 -4.7156 4.1155 38 1 1.3388 -1.7972 3.4190 39 1 0.4737 -3.0855 2.5351 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:30 Heat of formation + Delta-G solvation = -64.870719 kcal Electronic energy + Delta-G solvation = -16493.645596 eV Core-core repulsion = 14205.145346 eV Total energy + Delta-G solvation = -2288.500250 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52798 -37.86694 -34.72541 -32.42501 -31.14479 -29.35265 -27.96273 -26.27950 -23.16976 -23.02614 -21.18777 -20.79116 -20.22724 -17.81794 -16.88632 -16.32518 -15.85507 -15.57352 -14.93063 -14.73344 -14.51085 -14.12045 -13.70759 -13.49774 -13.16801 -12.68637 -12.61134 -12.46569 -11.97108 -11.94887 -11.90613 -11.85206 -11.72756 -11.61310 -11.45452 -11.35632 -11.15712 -10.68979 -10.38966 -10.25290 -10.09247 -8.41696 -6.07826 1.51979 1.59367 1.75314 2.63072 3.35330 3.80619 3.88879 3.90316 4.14013 4.18592 4.25998 4.52781 4.63009 4.67534 4.74380 4.77725 4.81744 4.87812 4.90851 4.98434 5.01075 5.02496 5.06304 5.12451 5.19623 5.22438 5.29623 5.32552 5.48876 5.51951 5.55880 5.64308 5.66815 5.70660 5.83081 5.96938 6.35669 6.44925 6.86835 7.67563 8.96667 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.012421 C = 0.009444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.514769 B = 2253.700182 C = 2964.117637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.036 4.036 3 Si 1.097 2.903 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.292 1.292 7 C -0.555 4.555 8 H 0.047 0.953 9 C 0.029 3.971 10 H -0.002 1.002 11 C -0.106 4.106 12 C -0.101 4.101 13 C -0.106 4.106 14 C -0.101 4.101 15 C -0.056 4.056 16 H 0.044 0.956 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.113 4.113 22 H 0.256 0.744 23 H 0.035 0.965 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 -9.534 4.228 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.233 4.233 3 Si 0.922 3.078 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.218 1.218 7 C -0.593 4.593 8 H 0.065 0.935 9 C 0.010 3.990 10 H 0.016 0.984 11 C -0.144 4.144 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.139 4.139 15 C -0.074 4.074 16 H 0.062 0.938 17 C -0.091 4.091 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.151 4.151 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.029 -7.890 4.300 11.408 hybrid contribution -0.515 -1.030 -0.376 1.212 sum 6.514 -8.920 3.924 11.722 Atomic orbital electron populations 1.70849 1.07969 1.30003 1.50268 1.26788 0.96581 1.05588 0.94339 0.83183 0.74562 0.72947 0.77091 1.20776 1.19739 1.21793 1.22096 0.94172 0.92353 1.50705 0.93529 1.18932 0.94239 0.94173 0.91614 0.98388 1.21572 0.96842 0.96987 0.99036 1.21310 0.96432 0.98976 0.97154 1.21436 0.98845 0.97639 0.96437 1.21473 0.97086 1.00177 0.95137 1.21031 0.96046 0.96192 0.94181 0.93808 1.21576 0.95375 0.98089 0.94016 1.22453 0.98906 0.98522 0.95258 1.22483 0.94864 1.01956 0.96201 1.22358 0.97361 0.98925 0.96992 1.22069 0.98092 0.98352 0.96608 0.93379 0.94650 0.96668 0.93592 0.92930 0.91237 0.92065 0.93482 0.91383 0.93312 0.91201 0.91566 0.91802 0.89799 0.91517 0.91335 0.94855 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.68 13.55 21.45 0.29 -58.39 16 2 C -0.04 -2.06 5.45 84.66 0.46 -1.60 16 3 Si 1.10 51.40 29.91 68.60 2.05 53.45 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.55 -29.59 5.50 25.60 0.14 -29.45 16 8 H 0.05 2.48 6.07 -2.91 -0.02 2.47 16 9 C 0.03 1.41 1.50 -11.54 -0.02 1.39 16 10 H 0.00 -0.11 5.38 -2.39 -0.01 -0.12 16 11 C -0.11 -4.85 5.34 30.60 0.16 -4.68 16 12 C -0.10 -3.99 5.70 30.60 0.17 -3.81 16 13 C -0.11 -3.50 5.92 30.59 0.18 -3.32 16 14 C -0.10 -3.58 4.78 30.59 0.15 -3.43 16 15 C -0.06 -2.21 1.24 -10.79 -0.01 -2.22 16 16 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 17 C -0.07 -2.70 2.22 -10.07 -0.02 -2.72 16 18 C -0.11 -3.24 5.31 31.70 0.17 -3.08 16 19 C -0.12 -2.94 6.91 31.91 0.22 -2.72 16 20 C -0.12 -3.39 6.83 31.67 0.22 -3.17 16 21 C -0.11 -4.33 5.92 31.32 0.19 -4.14 16 22 H 0.26 16.01 6.34 -92.71 -0.59 15.42 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.01 0.75 7.65 -2.39 -0.02 0.74 16 25 H 0.05 2.02 7.22 -2.39 -0.02 2.00 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.86 6.29 -2.39 -0.02 1.85 16 30 H 0.07 2.02 7.22 -2.38 -0.02 2.00 16 31 H 0.05 2.11 7.28 -2.39 -0.02 2.10 16 32 H 0.07 1.85 7.72 -2.39 -0.02 1.83 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.63 6.38 -2.38 -0.02 1.61 16 Total: -1.00 -61.16 284.50 5.52 -55.64 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.17 Total: 12.26 kcal Atomic # 6 Polarization: -64.97 SS G_CDS: 2.00 Total: -62.96 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.29 Total: -58.39 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -61.16 5.52 -55.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.226 kcal (2) G-P(sol) polarization free energy of solvation -61.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds