Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47107 * 269.99475 * 3 2 1 5 5 H 1.48496 * 109.47366 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.47278 * 149.99659 * 3 2 1 7 7 C 1.37883 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00002 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.47163 * 54.67354 * 9 7 2 11 11 C 1.53000 * 109.47345 * 294.67319 * 9 7 2 12 12 C 1.53002 * 109.47039 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47011 * 60.00293 * 12 11 9 14 14 C 1.53000 * 109.46980 * 299.99743 * 13 12 11 15 15 C 1.52998 * 109.47256 * 174.67051 * 9 7 2 16 16 H 1.08998 * 109.46772 * 60.00059 * 15 9 7 17 17 C 1.53000 * 109.47162 * 300.00379 * 15 9 7 18 18 C 1.54892 * 110.48730 * 293.12340 * 17 15 9 19 19 C 1.54884 * 102.74862 * 203.38132 * 18 17 15 20 20 C 1.54265 * 104.19976 * 37.94057 * 19 18 17 21 21 C 1.53878 * 106.59887 * 336.39029 * 20 19 18 22 22 H 0.97002 * 120.00440 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47245 * 59.99871 * 11 9 7 24 24 H 1.08998 * 109.47016 * 300.00145 * 11 9 7 25 25 H 1.08998 * 109.47115 * 299.99805 * 12 11 9 26 26 H 1.09005 * 109.46790 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47278 * 179.97438 * 13 12 11 28 28 H 1.08998 * 109.47121 * 59.99525 * 13 12 11 29 29 H 1.08998 * 109.47008 * 300.00403 * 14 13 12 30 30 H 1.08998 * 109.47245 * 180.02562 * 14 13 12 31 31 H 1.08999 * 110.53961 * 55.73601 * 17 15 9 32 32 H 1.08998 * 110.75452 * 85.05982 * 18 17 15 33 33 H 1.09004 * 110.75340 * 321.69747 * 18 17 15 34 34 H 1.09006 * 110.48688 * 279.26190 * 19 18 17 35 35 H 1.09004 * 110.48723 * 156.61951 * 19 18 17 36 36 H 1.08996 * 110.03478 * 95.67210 * 20 19 18 37 37 H 1.08997 * 110.03185 * 217.10895 * 20 19 18 38 38 H 1.09001 * 110.03490 * 119.28155 * 21 20 19 39 39 H 1.09003 * 110.03425 * 240.66943 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8746 -0.5996 0.8396 11 6 4.0221 -0.5922 -1.3096 12 6 5.5521 -0.5916 -1.3087 13 6 6.0625 -2.0276 -1.1740 14 6 5.5520 -2.6295 0.1367 15 6 4.0215 -2.6302 0.1356 16 1 3.6585 -3.2246 -0.7028 17 6 3.5110 -3.2321 1.4463 18 6 4.1506 -2.5116 2.6592 19 6 4.0360 -3.5695 3.7846 20 6 4.3118 -4.9102 3.0731 21 6 3.9780 -4.6958 1.5864 22 1 -0.4851 0.8400 -0.0004 23 1 3.6588 0.4310 -1.4054 24 1 3.6591 -1.1866 -2.1480 25 1 5.9147 0.0031 -0.4703 26 1 5.9158 -0.1624 -2.2423 27 1 7.1525 -2.0273 -1.1738 28 1 5.6999 -2.6223 -2.0124 29 1 5.9146 -2.0348 0.9751 30 1 5.9160 -3.6524 0.2330 31 1 2.4238 -3.1721 1.4968 32 1 3.5890 -1.6131 2.9148 33 1 5.1950 -2.2718 2.4592 34 1 3.0336 -3.5640 4.2128 35 1 4.7829 -3.3870 4.5572 36 1 5.3611 -5.1832 3.1845 37 1 3.6761 -5.6916 3.4896 38 1 4.8653 -4.8645 0.9763 39 1 3.1808 -5.3736 1.2811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = -41.279553 kcal Electronic energy + Delta-G solvation = -16428.491654 eV Core-core repulsion = 14141.014394 eV Total energy + Delta-G solvation = -2287.477260 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10310 -36.31977 -32.74363 -31.07677 -30.13564 -28.20175 -26.58928 -24.39163 -22.31961 -20.69016 -20.29651 -19.09470 -17.91266 -16.62603 -15.50699 -14.97289 -14.27911 -13.74324 -13.52336 -13.40099 -13.02710 -12.77987 -12.67754 -12.04494 -11.52322 -11.22722 -10.95355 -10.85642 -10.71285 -10.55667 -10.50427 -10.36826 -10.23767 -9.91281 -9.84882 -9.62243 -9.60528 -9.27357 -8.79622 -8.61724 -8.41519 -5.99202 -3.96023 3.32185 3.42439 3.44897 4.48588 5.10901 5.15113 5.19815 5.32173 5.42407 5.52130 5.56052 5.85875 5.93789 6.00037 6.06851 6.11533 6.18459 6.22901 6.25496 6.26570 6.32894 6.36744 6.41934 6.46438 6.56117 6.61292 6.70808 6.75356 6.81804 6.86040 6.93861 7.10303 7.21983 7.28480 7.41039 7.70496 7.89335 8.62900 9.06162 9.64951 11.14143 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.011776 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.692592 B = 2377.112793 C = 3046.622373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.028 0.972 11 C -0.120 4.120 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.058 4.058 16 H 0.058 0.942 17 C -0.075 4.075 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.127 4.127 22 H 0.261 0.739 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -5.658 2.688 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.539 4.539 8 H 0.092 0.908 9 C 0.001 3.999 10 H 0.046 0.954 11 C -0.157 4.157 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.157 4.157 15 C -0.077 4.077 16 H 0.077 0.923 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.163 4.163 20 C -0.159 4.159 21 C -0.165 4.165 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.753 -5.555 2.693 12.399 hybrid contribution 0.319 1.018 -0.110 1.072 sum 11.071 -4.537 2.583 12.241 Atomic orbital electron populations 1.69903 1.06244 1.26642 1.51664 1.24996 0.94579 0.98839 0.94819 0.86940 0.80244 0.84028 0.77933 1.20719 1.22578 1.18869 1.21083 0.89017 0.94139 1.49709 0.90831 1.19180 0.96252 0.91832 0.92653 0.95355 1.21949 0.92308 1.00160 1.01319 1.21622 0.98156 0.96188 1.00041 1.21475 0.98535 0.96722 0.98316 1.21798 0.97513 0.99400 0.96952 1.20946 0.92265 0.98229 0.96240 0.92339 1.21932 1.01316 0.91837 0.94260 1.22615 1.00636 0.97897 0.94610 1.22364 1.00809 0.95342 0.97800 1.22098 1.00163 0.97407 0.96215 1.22346 1.00575 0.98109 0.95455 0.92923 0.93801 0.92534 0.92981 0.93623 0.93479 0.92548 0.92178 0.92990 0.89409 0.91401 0.91743 0.92011 0.92765 0.92779 0.92775 0.92034 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 3 Si 0.88 22.07 24.66 -169.99 -4.19 17.88 16 4 H -0.28 -6.94 6.88 56.52 0.39 -6.55 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.26 -6.36 6.39 56.52 0.36 -6.00 16 7 C -0.50 -13.66 8.18 -34.44 -0.28 -13.94 16 8 H 0.07 2.17 7.21 -52.49 -0.38 1.79 16 9 C 0.02 0.45 1.07 -91.77 -0.10 0.35 16 10 H 0.03 0.68 6.09 -51.92 -0.32 0.36 16 11 C -0.12 -2.57 4.78 -26.73 -0.13 -2.70 16 12 C -0.12 -2.17 5.92 -26.73 -0.16 -2.32 16 13 C -0.11 -1.77 5.92 -26.73 -0.16 -1.93 16 14 C -0.12 -1.95 4.57 -26.71 -0.12 -2.07 16 15 C -0.06 -1.12 1.51 -90.60 -0.14 -1.26 16 16 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 17 C -0.08 -1.37 2.48 -88.96 -0.22 -1.59 16 18 C -0.12 -2.05 5.38 -24.74 -0.13 -2.18 16 19 C -0.13 -1.82 6.83 -25.08 -0.17 -1.99 16 20 C -0.12 -1.65 6.80 -25.61 -0.17 -1.82 16 21 C -0.13 -1.94 6.20 -25.61 -0.16 -2.10 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.04 1.01 3.99 -51.93 -0.21 0.80 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.98 5.99 -51.93 -0.31 0.67 16 30 H 0.05 0.76 6.21 -51.93 -0.32 0.44 16 31 H 0.09 1.88 6.69 -51.93 -0.35 1.53 16 32 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 33 H 0.06 1.04 5.57 -51.93 -0.29 0.75 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.89 5.87 -51.93 -0.30 0.58 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 277.60 15.07 4.18 4.18 Total: -1.00 -28.57 277.60 -8.00 -36.57 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.73 Total: 0.02 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -2.04 Total: -31.72 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.19 Total: 17.88 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.57 -8.00 -36.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.707 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds