Wall clock time and date at job start Mon Mar 30 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47107 * 269.99475 * 3 2 1 5 5 H 1.48496 * 109.47366 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.47278 * 149.99659 * 3 2 1 7 7 C 1.37883 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00002 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.47163 * 54.67354 * 9 7 2 11 11 C 1.53000 * 109.47345 * 294.67319 * 9 7 2 12 12 C 1.53002 * 109.47039 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47011 * 60.00293 * 12 11 9 14 14 C 1.53000 * 109.46980 * 299.99743 * 13 12 11 15 15 C 1.52998 * 109.47256 * 174.67051 * 9 7 2 16 16 H 1.08998 * 109.46772 * 60.00059 * 15 9 7 17 17 C 1.53000 * 109.47162 * 300.00379 * 15 9 7 18 18 C 1.54892 * 110.48730 * 293.12340 * 17 15 9 19 19 C 1.54884 * 102.74862 * 203.38132 * 18 17 15 20 20 C 1.54265 * 104.19976 * 37.94057 * 19 18 17 21 21 C 1.53878 * 106.59887 * 336.39029 * 20 19 18 22 22 H 0.97002 * 120.00440 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47245 * 59.99871 * 11 9 7 24 24 H 1.08998 * 109.47016 * 300.00145 * 11 9 7 25 25 H 1.08998 * 109.47115 * 299.99805 * 12 11 9 26 26 H 1.09005 * 109.46790 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47278 * 179.97438 * 13 12 11 28 28 H 1.08998 * 109.47121 * 59.99525 * 13 12 11 29 29 H 1.08998 * 109.47008 * 300.00403 * 14 13 12 30 30 H 1.08998 * 109.47245 * 180.02562 * 14 13 12 31 31 H 1.08999 * 110.53961 * 55.73601 * 17 15 9 32 32 H 1.08998 * 110.75452 * 85.05982 * 18 17 15 33 33 H 1.09004 * 110.75340 * 321.69747 * 18 17 15 34 34 H 1.09006 * 110.48688 * 279.26190 * 19 18 17 35 35 H 1.09004 * 110.48723 * 156.61951 * 19 18 17 36 36 H 1.08996 * 110.03478 * 95.67210 * 20 19 18 37 37 H 1.08997 * 110.03185 * 217.10895 * 20 19 18 38 38 H 1.09001 * 110.03490 * 119.28155 * 21 20 19 39 39 H 1.09003 * 110.03425 * 240.66943 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8746 -0.5996 0.8396 11 6 4.0221 -0.5922 -1.3096 12 6 5.5521 -0.5916 -1.3087 13 6 6.0625 -2.0276 -1.1740 14 6 5.5520 -2.6295 0.1367 15 6 4.0215 -2.6302 0.1356 16 1 3.6585 -3.2246 -0.7028 17 6 3.5110 -3.2321 1.4463 18 6 4.1506 -2.5116 2.6592 19 6 4.0360 -3.5695 3.7846 20 6 4.3118 -4.9102 3.0731 21 6 3.9780 -4.6958 1.5864 22 1 -0.4851 0.8400 -0.0004 23 1 3.6588 0.4310 -1.4054 24 1 3.6591 -1.1866 -2.1480 25 1 5.9147 0.0031 -0.4703 26 1 5.9158 -0.1624 -2.2423 27 1 7.1525 -2.0273 -1.1738 28 1 5.6999 -2.6223 -2.0124 29 1 5.9146 -2.0348 0.9751 30 1 5.9160 -3.6524 0.2330 31 1 2.4238 -3.1721 1.4968 32 1 3.5890 -1.6131 2.9148 33 1 5.1950 -2.2718 2.4592 34 1 3.0336 -3.5640 4.2128 35 1 4.7829 -3.3870 4.5572 36 1 5.3611 -5.1832 3.1845 37 1 3.6761 -5.6916 3.4896 38 1 4.8653 -4.8645 0.9763 39 1 3.1808 -5.3736 1.2811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:35 Heat of formation + Delta-G solvation = -56.619135 kcal Electronic energy + Delta-G solvation = -16429.156828 eV Core-core repulsion = 14141.014394 eV Total energy + Delta-G solvation = -2288.142434 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 222.168 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57374 -37.70568 -34.78707 -32.52612 -31.88131 -29.45934 -28.04965 -26.26592 -23.78635 -22.32627 -21.59453 -20.47638 -19.42686 -18.75911 -17.02225 -16.44985 -15.86142 -15.22388 -15.02865 -14.76775 -14.72311 -14.63635 -14.04116 -13.58135 -13.16528 -13.00717 -12.45415 -12.32361 -12.09498 -11.98575 -11.89881 -11.85143 -11.74107 -11.57047 -11.38396 -11.21251 -11.07473 -10.87991 -10.69572 -10.33933 -10.32826 -8.24411 -6.23977 1.29114 1.33408 1.43853 2.35121 3.11606 3.79907 3.88937 3.96390 4.08506 4.18813 4.24147 4.50215 4.61287 4.65620 4.72511 4.80671 4.85472 4.89291 4.91950 4.94367 4.95716 4.99255 5.08348 5.11027 5.20974 5.29424 5.33971 5.36915 5.39200 5.49935 5.51225 5.61292 5.66411 5.71533 5.77791 5.88020 5.95708 6.43133 6.83269 7.39853 8.92763 Molecular weight = 222.17amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.011776 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.692592 B = 2377.112793 C = 3046.622373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.007 3.993 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.301 1.301 6 H -0.245 1.245 7 C -0.495 4.495 8 H 0.031 0.969 9 C 0.021 3.979 10 H 0.021 0.979 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.057 4.057 16 H 0.041 0.959 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.122 4.122 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.745 -6.135 3.005 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.188 4.188 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.168 1.168 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.002 3.998 10 H 0.040 0.960 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.075 4.075 16 H 0.060 0.940 17 C -0.099 4.099 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.159 4.159 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.607 -6.046 3.008 16.093 hybrid contribution -0.977 1.092 -0.222 1.481 sum 13.631 -4.955 2.786 14.768 Atomic orbital electron populations 1.70063 1.08131 1.27470 1.54182 1.25820 0.95271 1.02673 0.95045 0.85952 0.79547 0.79442 0.78462 1.19740 1.22912 1.16836 1.21410 0.91868 0.92314 1.47717 0.95051 1.19133 0.92864 0.94525 0.93263 0.96046 1.21879 0.95844 0.98605 0.99693 1.21594 0.94489 0.98116 1.01420 1.21491 1.00533 0.95017 0.97769 1.21746 0.94155 1.01248 0.97790 1.20882 0.95154 0.95434 0.96043 0.94034 1.21839 0.98509 0.94768 0.94758 1.22591 1.00784 0.97328 0.94978 1.22356 1.01077 0.95064 0.97550 1.22085 1.01955 0.96906 0.94331 1.22296 1.00970 0.95240 0.97425 0.93037 0.95501 0.93508 0.92550 0.91507 0.90055 0.92416 0.91632 0.90440 0.94365 0.94486 0.89969 0.93173 0.90306 0.90228 0.91785 0.90290 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.56 13.96 21.45 0.30 -61.26 16 2 C 0.01 0.44 5.45 84.66 0.46 0.90 16 3 Si 0.94 46.43 24.66 68.60 1.69 48.12 16 4 H -0.27 -12.93 6.88 99.48 0.68 -12.24 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.24 -11.21 6.39 99.48 0.64 -10.57 16 7 C -0.49 -28.38 8.18 25.60 0.21 -28.17 16 8 H 0.03 2.01 7.21 -2.91 -0.02 1.98 16 9 C 0.02 0.96 1.07 -11.54 -0.01 0.94 16 10 H 0.02 1.02 6.09 -2.38 -0.01 1.00 16 11 C -0.12 -5.15 4.78 30.59 0.15 -5.00 16 12 C -0.12 -3.79 5.92 30.60 0.18 -3.61 16 13 C -0.11 -3.00 5.92 30.59 0.18 -2.81 16 14 C -0.11 -3.25 4.57 30.61 0.14 -3.11 16 15 C -0.06 -2.15 1.51 -10.78 -0.02 -2.17 16 16 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 17 C -0.08 -2.96 2.48 -9.72 -0.02 -2.99 16 18 C -0.12 -3.97 5.38 31.88 0.17 -3.80 16 19 C -0.12 -3.33 6.83 31.67 0.22 -3.11 16 20 C -0.12 -2.77 6.80 31.32 0.21 -2.56 16 21 C -0.12 -3.51 6.20 31.32 0.19 -3.31 16 22 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.03 1.20 3.99 -2.39 -0.01 1.19 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.86 5.99 -2.39 -0.01 1.84 16 30 H 0.08 1.89 6.21 -2.39 -0.01 1.88 16 31 H 0.04 1.76 6.69 -2.39 -0.02 1.74 16 32 H 0.04 1.42 8.01 -2.39 -0.02 1.40 16 33 H 0.08 2.43 5.57 -2.39 -0.01 2.42 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 2.00 5.87 -2.39 -0.01 1.99 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -65.34 277.60 4.96 -60.38 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.91 Total: 11.55 kcal Atomic # 6 Polarization: -60.86 SS G_CDS: 2.06 Total: -58.80 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.30 Total: -61.26 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.69 Total: 48.12 kcal Total: -65.34 4.96 -60.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.760 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds