Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40086 * 126.03730 * 2 1 4 4 C 1.30837 * 108.20511 * 179.73322 * 3 2 1 5 5 C 1.39867 * 108.20349 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.04111 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47207 * 263.94108 * 6 5 4 8 8 H 1.07998 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00143 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99757 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00226 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46908 * 59.99915 * 11 9 7 13 13 H 1.48494 * 109.46931 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46913 * 299.99922 * 11 9 7 15 15 C 1.34950 * 126.03774 * 179.67915 * 2 1 3 16 16 C 1.50704 * 126.12305 * 0.27098 * 15 2 1 17 17 C 1.52995 * 109.47259 * 33.34733 * 16 15 2 18 18 C 1.53003 * 109.46784 * 153.34571 * 16 15 2 19 19 C 1.52992 * 109.47118 * 273.34274 * 16 15 2 20 20 H 1.09001 * 109.47100 * 96.93331 * 1 2 3 21 21 H 1.09005 * 109.47607 * 216.93506 * 1 2 3 22 22 H 1.09003 * 109.47707 * 336.93690 * 1 2 3 23 23 H 1.08001 * 125.90246 * 179.97438 * 4 3 2 24 24 H 1.08999 * 109.47358 * 23.94576 * 6 5 4 25 25 H 1.09004 * 109.47238 * 143.94502 * 6 5 4 26 26 H 0.97003 * 119.99524 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.47326 * 48.17243 * 17 16 15 28 28 H 1.09004 * 109.47359 * 168.16985 * 17 16 15 29 29 H 1.08999 * 109.47090 * 288.17298 * 17 16 15 30 30 H 1.09004 * 109.47113 * 72.32790 * 18 16 15 31 31 H 1.08994 * 109.47098 * 192.32770 * 18 16 15 32 32 H 1.08997 * 109.47203 * 312.32902 * 18 16 15 33 33 H 1.09003 * 109.46941 * 60.00209 * 19 16 15 34 34 H 1.08995 * 109.47350 * 180.02562 * 19 16 15 35 35 H 1.09001 * 109.47217 * 300.00410 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0058 5 6 3.5436 -0.6665 0.0102 6 6 4.7679 -1.5453 0.0169 7 6 5.0931 -1.9645 -1.3936 8 1 4.4748 -1.6286 -2.2129 9 6 6.1799 -2.7769 -1.6382 10 7 6.9331 -3.1855 -0.6405 11 14 6.5834 -3.2960 -3.3867 12 1 6.8436 -2.0901 -4.2134 13 1 7.7904 -4.1610 -3.3801 14 1 5.4373 -4.0489 -3.9564 15 6 2.2589 -1.0912 0.0061 16 6 1.7972 -2.5258 0.0084 17 6 0.4970 -2.6444 -0.7892 18 6 2.8707 -3.4080 -0.6322 19 6 1.5554 -2.9814 1.4487 20 1 -0.3633 -0.1241 -1.0202 21 1 -0.3634 -0.8214 0.6175 22 1 -0.3634 0.9455 0.4026 23 1 4.4054 1.3710 0.0069 24 1 5.6094 -0.9928 0.4349 25 1 4.5767 -2.4302 0.6240 26 1 7.6975 -3.7574 -0.8125 27 1 0.6081 -2.1302 -1.7438 28 1 0.2745 -3.6966 -0.9671 29 1 -0.3180 -2.1911 -0.2250 30 1 3.7192 -3.4982 0.0462 31 1 2.4575 -4.3969 -0.8306 32 1 3.2003 -2.9574 -1.5683 33 1 0.7906 -2.3529 1.9051 34 1 1.2219 -4.0191 1.4505 35 1 2.4818 -2.8969 2.0169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260486438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = 72.299180 kcal Electronic energy + Delta-G solvation = -15997.121196 eV Core-core repulsion = 13611.028737 eV Total energy + Delta-G solvation = -2386.092460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76519 -36.21637 -33.92598 -32.24498 -29.84234 -27.74198 -26.93789 -26.53078 -25.14229 -22.65727 -20.84264 -19.77967 -18.08092 -16.28725 -15.62794 -14.95238 -14.46248 -13.98729 -13.79638 -13.56600 -12.96586 -12.58682 -12.51049 -12.11976 -12.00682 -11.63978 -11.57598 -11.22196 -10.99048 -10.83125 -10.70821 -10.52130 -10.17000 -9.97156 -9.60243 -9.33822 -9.09174 -8.49657 -8.27503 -7.25330 -5.93236 -3.91969 2.61965 3.18642 3.35729 3.40658 3.43130 3.76505 4.52462 4.96668 5.06400 5.21875 5.34161 5.39865 5.52155 5.58655 5.76940 5.83377 5.86007 6.03554 6.08831 6.31216 6.37162 6.51062 6.56027 6.66841 6.82065 7.04968 7.08317 7.49511 7.57692 7.70949 7.87071 7.94262 8.05890 8.48782 8.52182 9.07814 9.66385 11.15563 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.009940 C = 0.008918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.057562 B = 2816.328621 C = 3139.004136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.386 5.386 3 N -0.321 5.321 4 C 0.043 3.957 5 C -0.182 4.182 6 C 0.081 3.919 7 C -0.493 4.493 8 H 0.053 0.947 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.884 3.116 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.076 3.924 16 C 0.004 3.996 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.135 4.135 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.174 0.826 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 0.728 2.068 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.170 5.170 3 N -0.143 5.143 4 C -0.142 4.142 5 C -0.192 4.192 6 C 0.043 3.957 7 C -0.531 4.531 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.712 3.288 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.049 4.049 16 C 0.002 3.998 17 C -0.210 4.210 18 C -0.205 4.205 19 C -0.193 4.193 20 H 0.083 0.917 21 H 0.100 0.900 22 H 0.096 0.904 23 H 0.191 0.809 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.524 1.645 2.096 12.805 hybrid contribution 0.773 -0.868 -1.076 1.584 sum -11.751 0.777 1.020 11.821 Atomic orbital electron populations 1.21875 0.76334 1.03247 1.02224 1.48101 1.05324 1.03732 1.59818 1.77143 1.02046 1.08154 1.26939 1.23718 0.94434 0.95548 1.00479 1.20639 0.95438 0.93730 1.09429 1.17934 0.87869 0.92859 0.97007 1.21015 1.10569 1.28925 0.92627 0.92886 1.24929 0.96331 0.96625 0.96420 1.69935 1.17425 1.35659 1.30493 0.86780 0.77756 0.78560 0.85692 1.20422 1.21416 1.20314 1.20690 0.90794 0.89126 1.04268 1.19120 0.96043 0.88944 0.95700 1.22272 0.96586 1.01993 1.00105 1.22531 0.97345 0.95970 1.04648 1.21873 1.01645 1.00269 0.95526 0.91705 0.90008 0.90393 0.80886 0.96080 0.94699 0.93026 0.92646 0.92230 0.92641 0.89194 0.94915 0.89185 0.93876 0.92390 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.38 9.50 59.84 0.57 1.95 16 2 N -0.39 -7.10 4.01 -63.88 -0.26 -7.35 16 3 N -0.32 -6.56 12.58 30.62 0.39 -6.17 16 4 C 0.04 0.91 11.96 -17.37 -0.21 0.70 16 5 C -0.18 -4.07 5.20 -105.05 -0.55 -4.61 16 6 C 0.08 2.03 4.54 -29.03 -0.13 1.90 16 7 C -0.49 -13.15 5.95 -34.44 -0.20 -13.36 16 8 H 0.05 1.44 7.23 -52.49 -0.38 1.07 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.64 13.29 55.43 0.74 -24.91 16 11 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 C 0.08 1.50 5.50 -82.26 -0.45 1.05 16 16 C 0.00 0.07 0.90 -155.66 -0.14 -0.07 16 17 C -0.15 -2.13 7.16 37.16 0.27 -1.87 16 18 C -0.15 -2.93 6.62 37.16 0.25 -2.68 16 19 C -0.14 -2.04 8.39 37.15 0.31 -1.73 16 20 H 0.06 0.77 7.79 -51.93 -0.40 0.36 16 21 H 0.08 0.91 5.75 -51.93 -0.30 0.61 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.17 3.27 8.06 -52.49 -0.42 2.84 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.90 5.57 -51.93 -0.29 0.62 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 0.83 7.99 -51.93 -0.41 0.41 16 28 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 29 H 0.05 0.64 5.06 -51.93 -0.26 0.38 16 30 H 0.09 2.01 4.86 -51.93 -0.25 1.76 16 31 H 0.03 0.57 7.95 -51.93 -0.41 0.15 16 32 H 0.09 2.02 5.37 -51.93 -0.28 1.75 16 33 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 274.16 15.07 4.13 4.13 Total: -1.00 -29.96 274.16 -5.47 -35.43 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.06 Total: -0.06 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.39 Total: -17.25 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.87 Total: -38.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.96 -5.47 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.726 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds