Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40086 * 126.03730 * 2 1 4 4 C 1.30837 * 108.20511 * 179.73322 * 3 2 1 5 5 C 1.39867 * 108.20349 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.04111 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47207 * 263.94108 * 6 5 4 8 8 H 1.07998 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00143 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99757 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00226 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46908 * 59.99915 * 11 9 7 13 13 H 1.48494 * 109.46931 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46913 * 299.99922 * 11 9 7 15 15 C 1.34950 * 126.03774 * 179.67915 * 2 1 3 16 16 C 1.50704 * 126.12305 * 0.27098 * 15 2 1 17 17 C 1.52995 * 109.47259 * 33.34733 * 16 15 2 18 18 C 1.53003 * 109.46784 * 153.34571 * 16 15 2 19 19 C 1.52992 * 109.47118 * 273.34274 * 16 15 2 20 20 H 1.09001 * 109.47100 * 96.93331 * 1 2 3 21 21 H 1.09005 * 109.47607 * 216.93506 * 1 2 3 22 22 H 1.09003 * 109.47707 * 336.93690 * 1 2 3 23 23 H 1.08001 * 125.90246 * 179.97438 * 4 3 2 24 24 H 1.08999 * 109.47358 * 23.94576 * 6 5 4 25 25 H 1.09004 * 109.47238 * 143.94502 * 6 5 4 26 26 H 0.97003 * 119.99524 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.47326 * 48.17243 * 17 16 15 28 28 H 1.09004 * 109.47359 * 168.16985 * 17 16 15 29 29 H 1.08999 * 109.47090 * 288.17298 * 17 16 15 30 30 H 1.09004 * 109.47113 * 72.32790 * 18 16 15 31 31 H 1.08994 * 109.47098 * 192.32770 * 18 16 15 32 32 H 1.08997 * 109.47203 * 312.32902 * 18 16 15 33 33 H 1.09003 * 109.46941 * 60.00209 * 19 16 15 34 34 H 1.08995 * 109.47350 * 180.02562 * 19 16 15 35 35 H 1.09001 * 109.47217 * 300.00410 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0058 5 6 3.5436 -0.6665 0.0102 6 6 4.7679 -1.5453 0.0169 7 6 5.0931 -1.9645 -1.3936 8 1 4.4748 -1.6286 -2.2129 9 6 6.1799 -2.7769 -1.6382 10 7 6.9331 -3.1855 -0.6405 11 14 6.5834 -3.2960 -3.3867 12 1 6.8436 -2.0901 -4.2134 13 1 7.7904 -4.1610 -3.3801 14 1 5.4373 -4.0489 -3.9564 15 6 2.2589 -1.0912 0.0061 16 6 1.7972 -2.5258 0.0084 17 6 0.4970 -2.6444 -0.7892 18 6 2.8707 -3.4080 -0.6322 19 6 1.5554 -2.9814 1.4487 20 1 -0.3633 -0.1241 -1.0202 21 1 -0.3634 -0.8214 0.6175 22 1 -0.3634 0.9455 0.4026 23 1 4.4054 1.3710 0.0069 24 1 5.6094 -0.9928 0.4349 25 1 4.5767 -2.4302 0.6240 26 1 7.6975 -3.7574 -0.8125 27 1 0.6081 -2.1302 -1.7438 28 1 0.2745 -3.6966 -0.9671 29 1 -0.3180 -2.1911 -0.2250 30 1 3.7192 -3.4982 0.0462 31 1 2.4575 -4.3969 -0.8306 32 1 3.2003 -2.9574 -1.5683 33 1 0.7906 -2.3529 1.9051 34 1 1.2219 -4.0191 1.4505 35 1 2.4818 -2.8969 2.0169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260486438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = 54.280070 kcal Electronic energy + Delta-G solvation = -15997.902564 eV Core-core repulsion = 13611.028737 eV Total energy + Delta-G solvation = -2386.873827 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30061 -37.62866 -35.71976 -33.96295 -31.56315 -29.30330 -28.20804 -27.93143 -26.75960 -24.53378 -22.32622 -21.34177 -19.57412 -18.39324 -17.12039 -16.41950 -16.28008 -15.36960 -15.13542 -14.91645 -14.40055 -14.34706 -13.95839 -13.72129 -13.40982 -13.34315 -12.85481 -12.75255 -12.59647 -12.55797 -12.23530 -12.07136 -11.64779 -11.58190 -11.40195 -11.34540 -10.83027 -10.38666 -9.96537 -8.93128 -8.03203 -6.09265 1.07572 1.43184 1.44372 1.51628 1.83399 2.07235 2.51102 3.25294 3.67364 3.81156 4.00691 4.14188 4.37838 4.46386 4.51734 4.62706 4.73688 4.82459 4.86016 4.94366 4.97575 5.16140 5.19862 5.23681 5.30354 5.38909 5.47499 5.63893 5.84020 5.88190 5.93099 6.09355 6.35066 6.42731 6.92946 6.95453 7.51945 9.03987 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.009940 C = 0.008918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.057562 B = 2816.328621 C = 3139.004136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.377 5.377 3 N -0.331 5.331 4 C 0.029 3.971 5 C -0.226 4.226 6 C 0.096 3.904 7 C -0.489 4.489 8 H 0.044 0.956 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.943 3.057 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.089 3.911 16 C 0.002 3.998 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.131 4.131 20 H 0.084 0.916 21 H 0.109 0.891 22 H 0.094 0.906 23 H 0.181 0.819 24 H -0.012 1.012 25 H 0.022 0.978 26 H 0.261 0.739 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 0.228 1.519 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.161 5.161 3 N -0.153 5.153 4 C -0.155 4.155 5 C -0.237 4.237 6 C 0.059 3.941 7 C -0.528 4.528 8 H 0.062 0.938 9 C -0.187 4.187 10 N -0.570 5.570 11 Si 0.769 3.231 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.039 4.039 16 C 0.000 4.000 17 C -0.204 4.204 18 C -0.197 4.197 19 C -0.188 4.188 20 H 0.102 0.898 21 H 0.127 0.873 22 H 0.112 0.888 23 H 0.198 0.802 24 H 0.007 0.993 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.363 1.167 1.542 15.485 hybrid contribution 1.562 -0.703 -0.876 1.924 sum -13.802 0.464 0.667 13.826 Atomic orbital electron populations 1.22386 0.72883 1.05449 1.04250 1.48495 1.07165 1.02598 1.57812 1.77081 1.01786 1.09167 1.27279 1.23855 0.95304 0.95281 1.01050 1.20487 0.95756 0.94166 1.13283 1.17613 0.88310 0.92399 0.95823 1.21136 1.10198 1.28382 0.93061 0.93796 1.25629 0.96299 0.96796 1.00001 1.70054 1.17988 1.36548 1.32433 0.85835 0.77786 0.78205 0.81273 1.20274 1.21062 1.19229 1.21009 0.90234 0.90766 1.01843 1.19233 0.96743 0.86490 0.97533 1.22245 0.95258 1.03577 0.99312 1.22302 0.97406 0.97634 1.02342 1.21832 1.01199 1.02247 0.93561 0.89793 0.87261 0.88767 0.80165 0.99345 0.96038 0.93050 0.93744 0.90373 0.89503 0.92625 0.92615 0.92308 0.91651 0.89953 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.97 9.50 127.77 1.21 3.18 16 2 N -0.38 -13.05 4.01 -356.03 -1.43 -14.48 16 3 N -0.33 -13.21 12.58 -57.02 -0.72 -13.93 16 4 C 0.03 1.24 11.96 85.24 1.02 2.26 16 5 C -0.23 -10.36 5.20 -20.14 -0.10 -10.47 16 6 C 0.10 5.08 4.54 29.10 0.13 5.21 16 7 C -0.49 -27.02 5.95 25.60 0.15 -26.87 16 8 H 0.04 2.46 7.23 -2.91 -0.02 2.44 16 9 C 0.01 0.57 5.46 84.65 0.46 1.03 16 10 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 11 Si 0.94 44.03 29.54 68.60 2.03 46.06 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.09 3.42 5.50 41.41 0.23 3.64 16 16 C 0.00 0.07 0.90 -52.93 -0.05 0.02 16 17 C -0.15 -3.50 7.16 71.98 0.52 -2.98 16 18 C -0.14 -5.49 6.62 71.98 0.48 -5.01 16 19 C -0.13 -3.59 8.39 71.98 0.60 -2.99 16 20 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 21 H 0.11 1.82 5.75 -2.38 -0.01 1.80 16 22 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.18 7.10 8.06 -2.91 -0.02 7.08 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H 0.02 1.19 5.57 -2.39 -0.01 1.18 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.04 1.17 7.99 -2.39 -0.02 1.15 16 28 H 0.08 1.61 7.96 -2.39 -0.02 1.59 16 29 H 0.09 1.52 5.06 -2.39 -0.01 1.50 16 30 H 0.05 2.57 4.86 -2.39 -0.01 2.55 16 31 H 0.05 1.87 7.95 -2.39 -0.02 1.85 16 32 H 0.06 2.66 5.37 -2.39 -0.01 2.65 16 33 H 0.06 1.50 7.80 -2.39 -0.02 1.48 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -66.66 274.16 5.89 -60.77 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.07 Total: 9.17 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 4.65 Total: -32.97 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.86 Total: -83.03 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.66 5.89 -60.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.052 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds