Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47555 * 2 1 4 4 C 1.52998 * 109.47198 * 120.00170 * 2 1 3 5 5 C 1.53008 * 109.47034 * 240.00361 * 2 1 3 6 6 N 1.46495 * 109.47092 * 64.10922 * 5 2 1 7 7 N 1.40086 * 126.03372 * 83.39657 * 6 5 2 8 8 C 1.30849 * 108.19993 * 179.85131 * 7 6 5 9 9 C 1.39870 * 108.20246 * 0.40231 * 8 7 6 10 10 C 1.34940 * 126.03807 * 263.69837 * 6 5 2 11 11 C 1.50704 * 126.12669 * 359.96319 * 10 6 5 12 12 C 1.50705 * 109.47216 * 264.84594 * 11 10 6 13 13 H 1.07995 * 119.99535 * 3.81041 * 12 11 10 14 14 C 1.37872 * 120.00081 * 183.80836 * 12 11 10 15 15 N 1.31515 * 120.00256 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47273 * 59.99799 * 16 14 12 18 18 H 1.48504 * 109.46911 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47215 * 299.99780 * 16 14 12 20 20 H 1.09001 * 109.47076 * 59.99408 * 1 2 3 21 21 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47267 * 300.00184 * 1 2 3 23 23 H 1.08999 * 109.46883 * 65.36628 * 3 2 1 24 24 H 1.08999 * 109.47561 * 185.36606 * 3 2 1 25 25 H 1.09001 * 109.47043 * 305.37097 * 3 2 1 26 26 H 1.09002 * 109.47111 * 60.00182 * 4 2 1 27 27 H 1.09001 * 109.47410 * 179.97438 * 4 2 1 28 28 H 1.09003 * 109.47213 * 299.99913 * 4 2 1 29 29 H 1.09003 * 109.46787 * 184.11115 * 5 2 1 30 30 H 1.09002 * 109.46826 * 304.10791 * 5 2 1 31 31 H 1.07997 * 125.89634 * 180.14013 * 8 7 6 32 32 H 1.07997 * 126.03766 * 179.74293 * 9 8 7 33 33 H 1.09002 * 109.47245 * 24.84553 * 11 10 6 34 34 H 1.09008 * 109.47429 * 144.84992 * 11 10 6 35 35 H 0.96996 * 120.00433 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0399 -0.7212 -1.2494 6 7 1.6341 0.0242 -2.4434 7 7 2.3015 1.1264 -2.9932 8 6 1.6413 1.5167 -4.0534 9 6 0.5291 0.6826 -4.2071 10 6 0.5483 -0.2260 -3.2045 11 6 -0.4617 -1.3214 -2.9788 12 6 -0.0962 -2.5217 -3.8136 13 1 0.8127 -2.5170 -4.3969 14 6 -0.9220 -3.6256 -3.8326 15 7 -2.0285 -3.6314 -3.1218 16 14 -0.4684 -5.1136 -4.8668 17 1 0.8393 -5.6515 -4.4134 18 1 -1.5125 -6.1586 -4.7151 19 1 -0.3712 -4.7137 -6.2935 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.7573 1.9278 0.9341 24 1 3.1258 1.4440 -0.0961 25 1 1.6003 1.9833 -0.8380 26 1 1.6766 -1.7490 1.2491 27 1 3.1300 -0.7217 1.2490 28 1 1.6766 -0.2075 2.1392 29 1 3.1275 -0.7854 -1.2132 30 1 1.6177 -1.7254 -1.2869 31 1 1.9069 2.3430 -4.6960 32 1 -0.2138 0.7517 -4.9880 33 1 -0.4666 -1.5997 -1.9249 34 1 -1.4520 -0.9674 -3.2657 35 1 -2.6093 -4.4081 -3.1349 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = 34.788605 kcal Electronic energy + Delta-G solvation = -15688.926847 eV Core-core repulsion = 13301.207806 eV Total energy + Delta-G solvation = -2387.719040 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08113 -38.34384 -35.49822 -33.11988 -32.25455 -28.78238 -28.23269 -28.14477 -27.10607 -25.10018 -21.85758 -20.92925 -19.51914 -18.57408 -17.46476 -16.50088 -16.41116 -15.72647 -15.12813 -14.68197 -14.62014 -14.34073 -14.15594 -13.81558 -13.33052 -13.29789 -12.94739 -12.73262 -12.63093 -12.61285 -12.44784 -12.01844 -11.90370 -11.72707 -11.68682 -11.53233 -11.35440 -10.60468 -9.89591 -9.21855 -8.22868 -6.35471 1.17432 1.40665 1.41674 1.50319 1.81444 2.10837 2.41259 3.09023 3.64133 3.72080 3.93333 4.08995 4.23914 4.41676 4.48952 4.61771 4.71859 4.76303 4.80237 4.88089 4.98877 5.01024 5.06460 5.12654 5.16011 5.24173 5.28973 5.40586 5.46831 5.66450 5.72426 5.98036 6.06332 6.36672 6.73403 7.00687 7.32981 8.85978 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.009266 C = 0.007820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.790185 B = 3020.965106 C = 3579.900977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 C -0.123 4.123 4 C -0.132 4.132 5 C 0.136 3.864 6 N -0.366 5.366 7 N -0.327 5.327 8 C 0.043 3.957 9 C -0.315 4.315 10 C 0.118 3.882 11 C 0.083 3.917 12 C -0.532 4.532 13 H 0.047 0.953 14 C 0.016 3.984 15 N -0.921 5.921 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.272 1.272 20 H 0.030 0.970 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.210 0.790 32 H 0.138 0.862 33 H 0.027 0.973 34 H 0.018 0.982 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 6.408 6.067 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.181 4.181 4 C -0.190 4.190 5 C 0.015 3.985 6 N -0.148 5.148 7 N -0.148 5.148 8 C -0.142 4.142 9 C -0.344 4.344 10 C -0.011 4.011 11 C 0.045 3.955 12 C -0.570 4.570 13 H 0.065 0.935 14 C -0.183 4.183 15 N -0.560 5.560 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.197 1.197 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.227 0.773 32 H 0.156 0.844 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.699 6.443 6.987 12.232 hybrid contribution -0.980 -1.010 -1.328 1.935 sum 6.719 5.433 5.659 10.329 Atomic orbital electron populations 1.21897 0.94980 1.01382 1.01271 1.20924 0.95639 0.96925 0.94484 1.21700 1.00890 0.94269 1.01205 1.21772 1.01727 1.00107 0.95368 1.21934 1.01217 0.94095 0.81250 1.48554 1.19177 1.24432 1.22646 1.77097 1.21808 1.02644 1.13245 1.24171 0.93636 1.00500 0.95904 1.21326 1.05390 1.02763 1.04917 1.21745 0.90330 0.96733 0.92258 1.17802 0.90943 0.89352 0.97413 1.21168 1.07558 1.00009 1.28311 0.93474 1.25751 0.94626 1.01354 0.96607 1.70031 1.13122 1.31335 1.41490 0.85576 0.78148 0.78578 0.79231 1.19465 1.20301 1.19679 0.95056 0.93404 0.90899 0.91385 0.92298 0.94592 0.92495 0.91094 0.90599 0.88604 0.90003 0.77334 0.84370 0.95510 0.96362 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 7.18 71.98 0.52 -3.94 16 2 C -0.08 -2.25 0.85 -52.18 -0.04 -2.30 16 3 C -0.12 -3.35 7.84 71.98 0.56 -2.79 16 4 C -0.13 -2.90 8.47 71.98 0.61 -2.29 16 5 C 0.14 4.69 5.07 86.38 0.44 5.13 16 6 N -0.37 -14.75 2.84 -334.69 -0.95 -15.71 16 7 N -0.33 -12.52 11.10 -57.02 -0.63 -13.15 16 8 C 0.04 1.54 12.03 85.23 1.03 2.57 16 9 C -0.31 -13.13 10.72 21.99 0.24 -12.89 16 10 C 0.12 5.33 4.92 41.41 0.20 5.54 16 11 C 0.08 4.31 4.69 29.10 0.14 4.44 16 12 C -0.53 -29.63 9.09 25.60 0.23 -29.40 16 13 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 14 C 0.02 0.89 5.46 84.65 0.46 1.35 16 15 N -0.92 -53.01 13.29 21.45 0.28 -52.73 16 16 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H 0.03 1.17 6.54 -2.39 -0.02 1.15 16 21 H 0.05 1.68 7.12 -2.39 -0.02 1.67 16 22 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.03 1.16 6.82 -2.39 -0.02 1.14 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 3.11 7.25 -2.39 -0.02 3.10 16 31 H 0.21 5.48 8.06 -2.91 -0.02 5.45 16 32 H 0.14 5.53 8.06 -2.91 -0.02 5.51 16 33 H 0.03 1.40 5.21 -2.39 -0.01 1.38 16 34 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -62.09 284.65 6.15 -55.93 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.05 Total: 14.92 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 4.38 Total: -34.57 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.30 Total: -81.58 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -62.09 6.15 -55.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.722 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds