Wall clock time and date at job start Mon Mar 30 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46988 * 2 1 4 4 N 1.34128 * 125.98888 * 270.21096 * 3 2 1 5 5 C 1.30494 * 109.25420 * 180.19013 * 4 3 2 6 6 C 1.50700 * 125.65139 * 179.89851 * 5 4 3 7 7 C 1.50706 * 109.47062 * 304.68648 * 6 5 4 8 8 H 1.07998 * 119.99503 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00434 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99826 * 359.72891 * 9 7 6 11 11 Si 1.86800 * 120.00406 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46758 * 269.72576 * 11 9 7 13 13 H 1.48499 * 109.47026 * 29.72423 * 11 9 7 14 14 H 1.48496 * 109.47474 * 149.72459 * 11 9 7 15 15 N 1.35046 * 108.70199 * 359.63031 * 5 4 3 16 16 H 0.97000 * 126.40125 * 180.20406 * 15 5 4 17 17 C 1.34666 * 125.98739 * 90.00473 * 3 2 1 18 18 C 1.50698 * 126.59383 * 359.91938 * 17 3 2 19 19 C 1.52993 * 109.47343 * 120.02013 * 18 17 3 20 20 C 1.52997 * 109.47333 * 240.02432 * 18 17 3 21 21 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47027 * 299.99970 * 1 2 3 23 23 H 1.09000 * 109.46930 * 60.00156 * 1 2 3 24 24 H 1.09006 * 109.46784 * 240.00092 * 2 1 3 25 25 H 1.08993 * 109.47073 * 120.00494 * 2 1 3 26 26 H 1.09004 * 109.47406 * 184.69354 * 6 5 4 27 27 H 1.08993 * 109.47274 * 64.68981 * 6 5 4 28 28 H 0.97000 * 120.00236 * 0.27947 * 10 9 7 29 29 H 1.09008 * 109.46933 * 0.02562 * 18 17 3 30 30 H 1.09008 * 109.47159 * 60.00073 * 19 18 17 31 31 H 1.08998 * 109.47556 * 180.02562 * 19 18 17 32 32 H 1.09005 * 109.47351 * 300.00712 * 19 18 17 33 33 H 1.09004 * 109.47539 * 59.99808 * 20 18 17 34 34 H 1.08997 * 109.47556 * 180.02562 * 20 18 17 35 35 H 1.09004 * 109.47318 * 300.00048 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2913 2.1653 -1.0853 5 6 2.7129 3.3417 -0.7095 6 6 3.1110 4.4671 -1.6293 7 6 4.1756 3.9854 -2.5810 8 1 4.5283 2.9661 -2.5256 9 6 4.6986 4.8455 -3.5231 10 7 4.2646 6.0849 -3.5948 11 14 6.0177 4.2482 -4.7032 12 1 7.3578 4.4886 -4.1104 13 1 5.8393 2.7948 -4.9505 14 1 5.9046 4.9861 -5.9869 15 7 2.7279 3.3856 0.6401 16 1 2.9951 4.1397 1.1886 17 6 2.2962 2.1669 1.0896 18 6 2.1443 1.7421 2.5275 19 6 3.5000 1.8297 3.2311 20 6 1.1451 2.6642 3.2290 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.4995 5.2978 -1.0401 27 1 2.2407 4.7988 -2.1954 28 1 3.5795 6.3951 -2.9822 29 1 1.7804 0.7153 2.5665 30 1 3.8640 2.8564 3.1921 31 1 3.3903 1.5220 4.2710 32 1 4.2119 1.1727 2.7313 33 1 0.1792 2.6018 2.7277 34 1 1.0356 2.3573 4.2691 35 1 1.5089 3.6910 3.1900 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:04 Heat of formation + Delta-G solvation = 14.318818 kcal Electronic energy + Delta-G solvation = -15182.208074 eV Core-core repulsion = 12793.601397 eV Total energy + Delta-G solvation = -2388.606677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51502 -35.52492 -33.98640 -33.31930 -30.79486 -29.49740 -27.19734 -26.40478 -23.49398 -23.20920 -20.98122 -20.01856 -18.88992 -16.93770 -16.29629 -14.99757 -14.70738 -14.15150 -13.84755 -13.68077 -13.37650 -13.17465 -12.70171 -12.28665 -12.25397 -11.98663 -11.63070 -11.30485 -11.24553 -11.16526 -10.96301 -10.69523 -10.59538 -10.45352 -10.05374 -9.13436 -9.04609 -8.77797 -8.37980 -7.35646 -6.37354 -4.06934 2.67946 3.46052 3.51717 3.67932 3.76229 3.89549 4.57304 4.83556 4.91154 5.12691 5.16605 5.36733 5.39098 5.52373 5.53469 5.70765 5.74066 5.75178 5.76173 5.94287 6.03552 6.08491 6.17309 6.19085 6.21324 6.49627 6.50608 6.86062 6.99111 7.18045 7.49199 7.97378 8.18656 8.49959 8.84497 9.01621 9.61146 11.01698 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032623 B = 0.006988 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.084150 B = 4005.727387 C = 4341.524166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C 0.003 3.997 4 N -0.487 5.487 5 C 0.267 3.733 6 C 0.083 3.917 7 C -0.580 4.580 8 H 0.058 0.942 9 C 0.015 3.985 10 N -0.914 5.914 11 Si 1.076 2.924 12 H -0.289 1.289 13 H -0.287 1.287 14 H -0.284 1.284 15 N -0.572 5.572 16 H 0.408 0.592 17 C -0.050 4.050 18 C -0.014 4.014 19 C -0.146 4.146 20 C -0.144 4.144 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.021 0.979 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.881 -8.234 13.429 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.127 4.127 4 N -0.206 5.206 5 C 0.003 3.997 6 C 0.045 3.955 7 C -0.619 4.619 8 H 0.076 0.924 9 C -0.188 4.188 10 N -0.551 5.551 11 Si 0.904 3.096 12 H -0.215 1.215 13 H -0.213 1.213 14 H -0.209 1.209 15 N -0.174 5.174 16 H 0.245 0.755 17 C -0.165 4.165 18 C -0.033 4.033 19 C -0.203 4.203 20 C -0.202 4.202 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.040 -8.078 11.329 14.489 hybrid contribution -0.708 0.264 2.416 2.531 sum -4.748 -7.814 13.745 16.509 Atomic orbital electron populations 1.21700 0.95482 1.00741 1.01981 1.19710 0.95180 0.90563 1.01895 1.20432 1.06586 0.97097 0.88604 1.70230 1.18954 1.02245 1.29137 1.24072 0.98551 0.96655 0.80452 1.17921 0.97493 0.88189 0.91917 1.21854 1.21964 0.99997 1.18082 0.92409 1.25884 1.00541 0.94122 0.98223 1.70792 1.29191 1.16510 1.38590 0.83443 0.74989 0.75224 0.75989 1.21550 1.21258 1.20932 1.43222 1.52579 1.13125 1.08465 0.75508 1.20571 1.12221 0.87924 0.95740 1.19512 0.95743 0.99937 0.88134 1.21859 0.96789 1.01903 0.99772 1.21848 0.99275 0.99243 0.99816 0.92985 0.93208 0.92470 0.90995 0.91677 0.96101 0.94491 0.92320 0.89351 0.93135 0.92436 0.92295 0.92408 0.92416 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 37.16 0.37 -1.52 16 2 C -0.04 -0.54 6.12 -27.88 -0.17 -0.71 16 3 C 0.00 0.05 6.35 -82.85 -0.53 -0.48 16 4 N -0.49 -11.65 11.21 -7.07 -0.08 -11.73 16 5 C 0.27 6.24 7.37 -155.42 -1.15 5.09 16 6 C 0.08 2.17 4.91 -29.03 -0.14 2.03 16 7 C -0.58 -16.92 9.06 -34.44 -0.31 -17.23 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 10 N -0.91 -27.75 13.65 55.43 0.76 -26.99 16 11 Si 1.08 25.94 29.90 -169.99 -5.08 20.86 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 N -0.57 -10.69 6.15 -6.54 -0.04 -10.73 16 16 H 0.41 6.48 8.96 -40.82 -0.37 6.12 16 17 C -0.05 -0.86 5.75 -81.60 -0.47 -1.33 16 18 C -0.01 -0.17 3.27 -91.78 -0.30 -0.47 16 19 C -0.15 -1.66 9.17 37.15 0.34 -1.32 16 20 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.83 7.16 -51.93 -0.37 0.46 16 26 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 27 H 0.04 1.01 8.00 -51.93 -0.42 0.60 16 28 H 0.27 7.96 7.22 -40.82 -0.29 7.66 16 29 H 0.09 1.01 6.83 -51.92 -0.35 0.66 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -32.64 294.13 -7.78 -40.41 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.65 Total: 0.55 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.11 Total: -16.80 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.64 Total: -49.45 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.64 -7.78 -40.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.731 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds