Wall clock time and date at job start Mon Mar 30 2020 03:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48505 * 109.47025 * 240.00017 * 3 2 1 5 5 H 1.48497 * 109.47696 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47263 * 120.00154 * 3 2 1 7 7 C 1.40057 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.41582 * 119.99937 * 0.02562 * 7 2 1 10 10 N 1.32906 * 119.41614 * 179.97438 * 9 7 2 11 11 C 1.33424 * 121.82162 * 180.02562 * 10 9 7 12 12 C 1.37616 * 118.69321 * 0.02562 * 11 10 9 13 13 C 1.41264 * 118.22406 * 359.97438 * 12 11 10 14 14 N 1.38529 * 120.03722 * 180.02562 * 13 12 11 15 15 N 1.32071 * 119.92511 * 0.02562 * 13 12 11 16 16 C 1.52118 * 115.68792 * 180.02562 * 12 11 10 17 17 S 1.83264 * 103.64030 * 342.47545 * 16 12 11 18 18 C 1.52178 * 125.67437 * 180.02562 * 11 10 9 19 19 H 0.97003 * 119.99883 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00119 * 359.97438 * 14 13 12 21 21 H 0.96996 * 119.99574 * 179.97438 * 14 13 12 22 22 H 1.09002 * 110.61811 * 101.05852 * 16 12 11 23 23 H 1.09000 * 110.61388 * 223.89460 * 16 12 11 24 24 H 1.09003 * 110.61149 * 315.95611 * 18 11 10 25 25 H 1.08997 * 110.61346 * 78.94129 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2760 2.7465 -0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0072 -1.2129 0.0005 8 1 3.0871 -1.2129 0.0001 9 6 1.2992 -2.4391 0.0005 10 7 1.9754 -3.5832 0.0005 11 6 1.3573 -4.7657 0.0000 12 6 -0.0186 -4.7920 -0.0010 13 6 -0.7103 -3.5604 -0.0010 14 7 -2.0955 -3.5430 -0.0015 15 7 -0.0350 -2.4254 -0.0005 16 6 -0.6516 -6.1752 -0.0009 17 16 0.7132 -7.2752 -0.5357 18 6 2.0418 -6.1249 0.0005 19 1 -0.4850 0.8401 -0.0004 20 1 -2.5910 -4.3769 -0.0023 21 1 -2.5699 -2.6970 -0.0011 22 1 -0.9901 -6.4424 1.0002 23 1 -1.4792 -6.2185 -0.7089 24 1 2.8699 -6.1377 -0.7081 25 1 2.3884 -6.3796 1.0021 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613752.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:28 Heat of formation + Delta-G solvation = 43.656849 kcal Electronic energy + Delta-G solvation = -12850.393614 eV Core-core repulsion = 10568.719900 eV Total energy + Delta-G solvation = -2281.673714 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.22037 -34.64314 -34.21965 -32.57576 -29.81502 -28.30437 -27.44224 -24.35779 -21.15108 -20.98186 -17.83768 -17.13354 -15.82179 -15.36427 -14.84521 -14.54147 -14.27815 -13.54435 -13.06463 -12.86999 -12.67320 -12.18138 -11.46340 -11.41898 -11.31799 -10.77082 -10.48200 -10.40935 -10.09470 -9.37859 -9.12640 -8.17526 -7.42744 -7.35229 -7.19825 -6.60748 -4.80326 2.32905 2.41358 2.74169 2.96106 3.02713 3.05857 3.14412 3.84926 4.52250 4.58629 5.05565 5.58496 5.61235 5.75830 5.83787 5.98284 6.06973 6.23636 6.53802 6.92036 7.01338 7.27514 8.00592 8.03982 8.38252 8.51410 8.65693 9.14153 10.09146 10.27892 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.049297 B = 0.008488 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.850986 B = 3297.887053 C = 3828.450486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.067 3.933 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.397 4.397 8 H 0.095 0.905 9 C 0.430 3.570 10 N -0.614 5.614 11 C 0.204 3.796 12 C -0.399 4.399 13 C 0.462 3.538 14 N -0.855 5.855 15 N -0.550 5.550 16 C 0.024 3.976 17 S -0.303 6.303 18 C -0.004 4.004 19 H 0.275 0.725 20 H 0.393 0.607 21 H 0.398 0.602 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -4.266 0.619 4.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.160 4.160 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.432 4.432 8 H 0.113 0.887 9 C 0.193 3.807 10 N -0.336 5.336 11 C 0.053 3.947 12 C -0.415 4.415 13 C 0.208 3.792 14 N -0.400 5.400 15 N -0.277 5.277 16 C -0.125 4.125 17 S -0.077 6.077 18 C -0.153 4.153 19 H 0.086 0.914 20 H 0.220 0.780 21 H 0.227 0.773 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.035 -4.299 0.090 4.757 hybrid contribution -0.663 0.969 0.517 1.283 sum -2.698 -3.331 0.607 4.329 Atomic orbital electron populations 1.70117 1.07343 1.28197 1.27561 1.26100 0.95039 1.01399 0.93449 0.86172 0.79887 0.79377 0.80169 1.18691 1.20166 1.18698 1.19314 0.94758 0.87351 1.41776 0.88729 1.19455 0.84273 0.90174 0.86814 1.68169 1.40991 0.96705 1.27783 1.21094 0.89392 0.92991 0.91231 1.20468 0.95145 0.92792 1.33051 1.18557 0.85392 0.88463 0.86771 1.42021 1.03160 1.10212 1.84633 1.68947 1.09246 1.22856 1.26647 1.22104 0.96166 0.92337 1.01863 1.87355 1.05542 1.30876 1.83947 1.22628 0.97409 0.90755 1.04475 0.91378 0.77959 0.77313 0.90654 0.89925 0.87429 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.13 11.44 55.55 0.64 -17.50 15 2 C 0.07 1.67 5.50 -17.35 -0.10 1.57 15 3 Si 0.92 18.16 29.56 -169.99 -5.02 13.13 15 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.40 -10.72 9.38 -37.63 -0.35 -11.07 15 8 H 0.09 2.45 7.85 -52.49 -0.41 2.04 15 9 C 0.43 12.10 7.37 -158.81 -1.17 10.93 15 10 N -0.61 -16.34 10.33 -8.58 -0.09 -16.43 15 11 C 0.20 4.76 7.04 -81.39 -0.57 4.19 15 12 C -0.40 -8.82 6.00 -103.00 -0.62 -9.44 15 13 C 0.46 10.84 7.80 -154.94 -1.21 9.63 15 14 N -0.86 -15.55 9.05 31.41 0.28 -15.27 15 15 N -0.55 -14.88 7.93 -11.80 -0.09 -14.97 15 16 C 0.02 0.43 6.63 36.71 0.24 0.67 15 17 S -0.30 -5.34 23.47 -107.50 -2.52 -7.87 15 18 C 0.00 -0.07 7.40 36.74 0.27 0.20 15 19 H 0.28 6.32 8.29 -40.82 -0.34 5.98 15 20 H 0.39 5.75 7.91 -40.82 -0.32 5.43 15 21 H 0.40 7.01 8.95 -40.82 -0.37 6.65 15 22 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 23 H 0.08 1.31 7.85 -51.93 -0.41 0.91 15 24 H 0.11 1.90 8.14 -51.93 -0.42 1.47 15 25 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 LS Contribution 235.48 15.07 3.55 3.55 Total: -1.00 -29.79 235.48 -8.67 -38.46 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -1.91 Total: 10.22 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.50 Total: 6.67 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: 0.74 Total: -64.17 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.13 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -2.52 Total: -7.87 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.79 -8.67 -38.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613752.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.117 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds