Wall clock time and date at job start Mon Mar 30 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46763 * 2 1 4 4 N 1.28475 * 124.85477 * 269.95604 * 3 2 1 5 5 C 1.32759 * 109.93232 * 180.02562 * 4 3 2 6 6 C 1.41420 * 126.57098 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99842 * 180.02562 * 6 5 4 8 8 C 1.39847 * 120.00095 * 0.02562 * 6 5 4 9 9 N 1.30893 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00135 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47294 * 59.99741 * 10 8 6 12 12 H 1.48497 * 109.47193 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46715 * 299.99571 * 10 8 6 14 14 C 1.42239 * 106.86014 * 359.78564 * 5 4 3 15 15 C 1.35080 * 105.54478 * 0.34447 * 14 5 4 16 16 C 1.50699 * 126.30754 * 179.97438 * 15 14 5 17 17 C 1.52997 * 109.47337 * 84.68762 * 16 15 14 18 18 C 1.53006 * 109.47127 * 295.00177 * 17 16 15 19 19 C 1.52997 * 109.47232 * 175.00055 * 17 16 15 20 20 H 1.09007 * 109.47440 * 300.00081 * 1 2 3 21 21 H 1.08998 * 109.47252 * 60.00700 * 1 2 3 22 22 H 1.09003 * 109.47468 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47234 * 239.99683 * 2 1 3 24 24 H 1.09007 * 109.46745 * 119.99603 * 2 1 3 25 25 H 0.97004 * 120.00106 * 179.97438 * 9 8 6 26 26 H 1.07993 * 127.22774 * 180.26811 * 14 5 4 27 27 H 1.09002 * 109.47102 * 324.68553 * 16 15 14 28 28 H 1.09004 * 109.47407 * 204.68773 * 16 15 14 29 29 H 1.09001 * 109.47289 * 55.00130 * 17 16 15 30 30 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 31 31 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 32 32 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47140 * 180.02562 * 19 17 16 34 34 H 1.09001 * 109.47230 * 299.99295 * 19 17 16 35 35 H 1.09001 * 109.47375 * 60.00133 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2637 2.0732 -1.0543 5 6 2.6915 3.2826 -0.7124 6 6 3.0616 4.3256 -1.5929 7 1 3.3970 5.2728 -1.1972 8 6 2.9933 4.1303 -2.9760 9 7 2.5873 2.9821 -3.4556 10 14 3.4829 5.5077 -4.1390 11 1 4.9006 5.8782 -3.8986 12 1 3.3224 5.0508 -5.5428 13 1 2.6151 6.6890 -3.9002 14 6 2.7021 3.3299 0.7092 15 6 2.2769 2.1137 1.1150 16 6 2.1122 1.6562 2.5414 17 6 0.7416 2.0932 3.0622 18 6 0.6805 3.6211 3.1176 19 6 0.5235 1.5229 4.4650 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.5395 2.8468 -4.4149 26 1 2.9907 4.1628 1.3330 27 1 2.8937 2.1003 3.1579 28 1 2.1880 0.5697 2.5855 29 1 -0.0360 1.7225 2.3944 30 1 1.4581 3.9918 3.7855 31 1 0.8359 4.0273 2.1182 32 1 -0.2961 3.9325 3.4882 33 1 -0.4532 1.8340 4.8359 34 1 0.5668 0.4345 4.4256 35 1 1.3010 1.8937 5.1330 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260615394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:38 Heat of formation + Delta-G solvation = 48.598466 kcal Electronic energy + Delta-G solvation = -15513.621087 eV Core-core repulsion = 13126.500887 eV Total energy + Delta-G solvation = -2387.120200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47443 -36.00137 -33.87290 -32.50876 -29.81748 -28.85152 -26.85853 -25.68047 -25.20368 -22.30251 -20.10019 -19.71019 -18.56997 -16.07940 -15.62221 -14.90042 -14.50258 -14.22245 -13.80692 -13.44370 -13.06432 -12.58031 -12.35368 -12.09951 -11.95654 -11.69875 -11.53599 -11.16996 -10.94931 -10.86259 -10.77878 -10.57531 -10.47889 -10.25137 -10.14647 -9.69269 -9.02917 -8.20725 -7.29125 -7.10712 -6.14559 -3.99139 3.25254 3.30190 3.33504 3.56465 4.14772 4.31482 4.54561 5.14135 5.22627 5.26465 5.34256 5.63238 5.68606 5.79071 5.84964 5.87137 5.89650 5.99530 6.05521 6.10528 6.21073 6.25671 6.27394 6.41861 6.52054 6.73897 6.77702 6.92444 7.42943 7.53667 7.60131 7.99564 8.51262 8.84612 9.17028 9.42502 10.48607 10.84045 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.035922 B = 0.008042 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.269253 B = 3480.932497 C = 4002.490152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.135 3.865 3 N -0.329 5.329 4 N -0.325 5.325 5 C 0.188 3.812 6 C -0.451 4.451 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.786 5.786 10 Si 0.900 3.100 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.283 4.283 15 C -0.013 4.013 16 C -0.035 4.035 17 C -0.090 4.090 18 C -0.148 4.148 19 C -0.145 4.145 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.265 0.735 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -4.329 10.087 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.113 5.113 4 N -0.157 5.157 5 C 0.039 3.961 6 C -0.490 4.490 7 H 0.093 0.907 8 C -0.144 4.144 9 N -0.415 5.415 10 Si 0.726 3.274 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.314 4.314 15 C -0.139 4.139 16 C -0.074 4.074 17 C -0.109 4.109 18 C -0.206 4.206 19 C -0.203 4.203 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.006 -5.341 8.977 11.187 hybrid contribution 0.391 1.144 0.086 1.212 sum -3.615 -4.197 9.063 10.621 Atomic orbital electron populations 1.22182 0.95814 1.01402 1.02987 1.21235 0.94288 0.80922 1.02372 1.45489 1.51403 1.11037 1.03405 1.74726 1.27429 1.06114 1.07403 1.19265 0.95830 0.91353 0.89658 1.18453 1.42818 0.98095 0.89633 0.90728 1.25705 0.94227 0.95687 0.98815 1.69971 1.36018 1.22481 1.13059 0.86530 0.79602 0.82049 0.79183 1.19577 1.20930 1.19583 1.21317 1.17061 0.96924 0.96122 1.20869 1.09562 0.94301 0.89134 1.19997 0.96777 0.99334 0.91263 1.21089 0.97438 0.96586 0.95791 1.21893 1.00231 0.95102 1.03328 1.21857 1.01162 1.00314 0.96918 0.92573 0.91626 0.92036 0.89895 0.91050 0.92426 0.86396 0.91151 0.92581 0.91586 0.93205 0.90778 0.93816 0.93069 0.93140 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.44 6.80 -4.04 -0.03 2.42 16 3 N -0.33 -7.74 3.32 -56.97 -0.19 -7.93 16 4 N -0.33 -9.30 10.24 32.34 0.33 -8.97 16 5 C 0.19 5.47 6.78 -84.72 -0.57 4.90 16 6 C -0.45 -13.21 9.41 -37.77 -0.36 -13.57 16 7 H 0.07 2.07 7.84 -52.49 -0.41 1.65 16 8 C 0.07 2.05 5.49 -17.35 -0.10 1.96 16 9 N -0.79 -23.19 11.97 55.54 0.66 -22.53 16 10 Si 0.90 20.77 29.56 -169.99 -5.02 15.74 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 C -0.28 -7.04 9.16 -39.17 -0.36 -7.39 16 15 C -0.01 -0.29 5.79 -81.92 -0.47 -0.77 16 16 C -0.03 -0.57 4.97 -27.89 -0.14 -0.71 16 17 C -0.09 -1.31 2.91 -90.62 -0.26 -1.57 16 18 C -0.15 -2.24 8.87 37.16 0.33 -1.91 16 19 C -0.15 -1.66 9.19 37.16 0.34 -1.31 16 20 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 21 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 24 H 0.07 1.08 6.89 -51.92 -0.36 0.72 16 25 H 0.27 7.24 8.30 -40.82 -0.34 6.91 16 26 H 0.12 2.71 8.02 -52.49 -0.42 2.29 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.83 6.88 -51.93 -0.36 0.47 16 29 H 0.07 1.03 6.47 -51.93 -0.34 0.70 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.35 6.16 -51.93 -0.32 1.03 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 286.35 15.07 4.32 4.32 Total: -1.00 -32.41 286.35 -6.62 -39.03 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.48 Total: 0.56 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.24 Total: -20.22 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.81 Total: -39.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.41 -6.62 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260615394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.624 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds