Wall clock time and date at job start Mon Mar 30 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46763 * 2 1 4 4 N 1.28475 * 124.85477 * 269.95604 * 3 2 1 5 5 C 1.32759 * 109.93232 * 180.02562 * 4 3 2 6 6 C 1.41420 * 126.57098 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99842 * 180.02562 * 6 5 4 8 8 C 1.39847 * 120.00095 * 0.02562 * 6 5 4 9 9 N 1.30893 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00135 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47294 * 59.99741 * 10 8 6 12 12 H 1.48497 * 109.47193 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46715 * 299.99571 * 10 8 6 14 14 C 1.42239 * 106.86014 * 359.78564 * 5 4 3 15 15 C 1.35080 * 105.54478 * 0.34447 * 14 5 4 16 16 C 1.50699 * 126.30754 * 179.97438 * 15 14 5 17 17 C 1.52997 * 109.47337 * 84.68762 * 16 15 14 18 18 C 1.53006 * 109.47127 * 295.00177 * 17 16 15 19 19 C 1.52997 * 109.47232 * 175.00055 * 17 16 15 20 20 H 1.09007 * 109.47440 * 300.00081 * 1 2 3 21 21 H 1.08998 * 109.47252 * 60.00700 * 1 2 3 22 22 H 1.09003 * 109.47468 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47234 * 239.99683 * 2 1 3 24 24 H 1.09007 * 109.46745 * 119.99603 * 2 1 3 25 25 H 0.97004 * 120.00106 * 179.97438 * 9 8 6 26 26 H 1.07993 * 127.22774 * 180.26811 * 14 5 4 27 27 H 1.09002 * 109.47102 * 324.68553 * 16 15 14 28 28 H 1.09004 * 109.47407 * 204.68773 * 16 15 14 29 29 H 1.09001 * 109.47289 * 55.00130 * 17 16 15 30 30 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 31 31 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 32 32 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47140 * 180.02562 * 19 17 16 34 34 H 1.09001 * 109.47230 * 299.99295 * 19 17 16 35 35 H 1.09001 * 109.47375 * 60.00133 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2637 2.0732 -1.0543 5 6 2.6915 3.2826 -0.7124 6 6 3.0616 4.3256 -1.5929 7 1 3.3970 5.2728 -1.1972 8 6 2.9933 4.1303 -2.9760 9 7 2.5873 2.9821 -3.4556 10 14 3.4829 5.5077 -4.1390 11 1 4.9006 5.8782 -3.8986 12 1 3.3224 5.0508 -5.5428 13 1 2.6151 6.6890 -3.9002 14 6 2.7021 3.3299 0.7092 15 6 2.2769 2.1137 1.1150 16 6 2.1122 1.6562 2.5414 17 6 0.7416 2.0932 3.0622 18 6 0.6805 3.6211 3.1176 19 6 0.5235 1.5229 4.4650 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.5395 2.8468 -4.4149 26 1 2.9907 4.1628 1.3330 27 1 2.8937 2.1003 3.1579 28 1 2.1880 0.5697 2.5855 29 1 -0.0360 1.7225 2.3944 30 1 1.4581 3.9918 3.7855 31 1 0.8359 4.0273 2.1182 32 1 -0.2961 3.9325 3.4882 33 1 -0.4532 1.8340 4.8359 34 1 0.5668 0.4345 4.4256 35 1 1.3010 1.8937 5.1330 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260615394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:37 Heat of formation + Delta-G solvation = 28.642095 kcal Electronic energy + Delta-G solvation = -15514.486460 eV Core-core repulsion = 13126.500887 eV Total energy + Delta-G solvation = -2387.985573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.34369 -37.26161 -35.69507 -34.36348 -31.41940 -30.67948 -28.02733 -27.48125 -26.79417 -23.92197 -21.74093 -21.30998 -20.31597 -17.96493 -17.42479 -16.47365 -16.08766 -15.82131 -15.32118 -14.74290 -14.62015 -14.19572 -13.91530 -13.47525 -13.19765 -13.10874 -12.91458 -12.81655 -12.67047 -12.49777 -12.28280 -12.08147 -11.89838 -11.74286 -11.45555 -11.41336 -11.05586 -10.22390 -9.28709 -9.00678 -8.24431 -6.16561 1.40825 1.42545 1.53414 1.80149 2.34642 2.46276 2.53818 3.67770 3.88618 3.98301 4.03975 4.14231 4.27079 4.38439 4.52791 4.64135 4.73172 4.80611 4.85511 4.90052 5.00220 5.06735 5.11640 5.16274 5.22693 5.35044 5.40195 5.52433 5.54263 5.61057 5.75384 5.98678 6.49282 6.93744 7.07169 7.30473 8.47712 8.76087 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.035922 B = 0.008042 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.269253 B = 3480.932497 C = 4002.490152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 N -0.335 5.335 4 N -0.365 5.365 5 C 0.145 3.855 6 C -0.490 4.490 7 H 0.074 0.926 8 C 0.022 3.978 9 N -0.827 5.827 10 Si 0.981 3.019 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.263 1.263 14 C -0.315 4.315 15 C 0.012 3.988 16 C -0.032 4.032 17 C -0.085 4.085 18 C -0.148 4.148 19 C -0.137 4.137 20 H 0.061 0.939 21 H 0.029 0.971 22 H 0.104 0.896 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.269 0.731 26 H 0.125 0.875 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -5.241 11.959 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.001 3.999 3 N -0.120 5.120 4 N -0.198 5.198 5 C -0.005 4.005 6 C -0.529 4.529 7 H 0.093 0.907 8 C -0.191 4.191 9 N -0.457 5.457 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.199 1.199 13 H -0.187 1.187 14 C -0.344 4.344 15 C -0.114 4.114 16 C -0.071 4.071 17 C -0.104 4.104 18 C -0.205 4.205 19 C -0.194 4.194 20 H 0.080 0.920 21 H 0.048 0.952 22 H 0.123 0.877 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.415 -6.268 10.863 13.296 hybrid contribution 0.473 1.326 -0.376 1.457 sum -3.941 -4.942 10.487 12.245 Atomic orbital electron populations 1.22096 0.93935 1.03742 1.01449 1.21708 0.95844 0.78459 1.03935 1.45939 1.50563 1.12535 1.02956 1.74573 1.28355 1.06681 1.10149 1.19728 0.97058 0.91945 0.91777 1.18853 1.44352 0.98663 0.91066 0.90737 1.26658 0.93689 0.98542 1.00254 1.70113 1.37304 1.24800 1.13506 0.85289 0.79475 0.78324 0.76591 1.18663 1.19937 1.18735 1.21456 1.19367 0.98919 0.94707 1.21540 1.05779 0.92887 0.91244 1.20198 0.98494 1.00982 0.87400 1.21044 0.95636 0.95971 0.97786 1.21872 1.01599 0.95840 1.01212 1.21781 1.02183 1.01125 0.94327 0.91980 0.95212 0.87701 0.90833 0.86956 0.92183 0.85726 0.89846 0.89976 0.92756 0.92052 0.94792 0.92245 0.91961 0.91601 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.12 4.23 6.80 86.38 0.59 4.82 16 3 N -0.34 -15.86 3.32 -334.17 -1.11 -16.97 16 4 N -0.37 -21.70 10.24 -51.60 -0.53 -22.23 16 5 C 0.15 8.83 6.78 40.78 0.28 9.10 16 6 C -0.49 -30.14 9.41 23.44 0.22 -29.92 16 7 H 0.07 4.34 7.84 -2.91 -0.02 4.32 16 8 C 0.02 1.25 5.49 85.22 0.47 1.72 16 9 N -0.83 -50.74 11.97 21.81 0.26 -50.48 16 10 Si 0.98 43.88 29.56 68.60 2.03 45.91 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 14 C -0.31 -16.12 9.16 22.54 0.21 -15.92 16 15 C 0.01 0.53 5.79 41.20 0.24 0.77 16 16 C -0.03 -0.95 4.97 29.85 0.15 -0.80 16 17 C -0.09 -2.24 2.91 -10.79 -0.03 -2.27 16 18 C -0.15 -4.26 8.87 71.98 0.64 -3.62 16 19 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 20 H 0.06 1.79 6.47 -2.38 -0.02 1.77 16 21 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 24 H 0.11 2.97 6.89 -2.38 -0.02 2.95 16 25 H 0.27 15.17 8.30 -92.71 -0.77 14.40 16 26 H 0.12 5.95 8.02 -2.91 -0.02 5.93 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.05 6.88 -2.38 -0.02 2.04 16 29 H 0.05 1.56 6.47 -2.39 -0.02 1.55 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 1.24 6.16 -2.39 -0.01 1.23 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.04 286.35 5.86 -69.19 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.05 Total: 16.45 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 4.15 Total: -41.86 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -1.38 Total: -89.68 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.04 5.86 -69.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260615394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.831 kcal (2) G-P(sol) polarization free energy of solvation -75.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds