Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47022 * 2 1 4 4 N 1.36421 * 126.40184 * 265.02416 * 3 2 1 5 5 H 0.97000 * 126.55634 * 359.97438 * 4 3 2 6 6 C 1.37535 * 106.88933 * 179.97438 * 4 3 2 7 7 C 1.39993 * 125.96547 * 179.97438 * 6 4 3 8 8 H 1.07997 * 120.00313 * 354.25236 * 7 6 4 9 9 C 1.40241 * 120.00224 * 174.24869 * 7 6 4 10 10 N 1.30692 * 119.99788 * 6.04383 * 9 7 6 11 11 Si 1.86804 * 120.00005 * 186.04855 * 9 7 6 12 12 H 1.48500 * 109.47330 * 94.97874 * 11 9 7 13 13 H 1.48500 * 109.46565 * 214.97864 * 11 9 7 14 14 H 1.48499 * 109.46921 * 334.97866 * 11 9 7 15 15 N 1.32988 * 108.07449 * 359.97438 * 6 4 3 16 16 C 1.32754 * 109.22317 * 359.72984 * 15 6 4 17 17 C 1.50699 * 125.69331 * 180.26782 * 16 15 6 18 18 C 1.53004 * 109.46969 * 270.19902 * 17 16 15 19 19 C 1.52993 * 109.46768 * 65.00243 * 18 17 16 20 20 C 1.53003 * 109.46661 * 184.99807 * 18 17 16 21 21 H 1.08996 * 109.46980 * 300.00051 * 1 2 3 22 22 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47132 * 60.00222 * 1 2 3 24 24 H 1.08999 * 109.47132 * 119.99778 * 2 1 3 25 25 H 1.08996 * 109.47441 * 239.99682 * 2 1 3 26 26 H 0.97001 * 119.99877 * 180.02562 * 10 9 7 27 27 H 1.09000 * 109.47132 * 30.19838 * 17 16 15 28 28 H 1.09004 * 109.47171 * 150.20146 * 17 16 15 29 29 H 1.08995 * 109.47224 * 304.99983 * 18 17 16 30 30 H 1.09004 * 109.46951 * 180.02562 * 19 18 17 31 31 H 1.09004 * 109.46904 * 299.99218 * 19 18 17 32 32 H 1.08998 * 109.47897 * 59.99632 * 19 18 17 33 33 H 1.08998 * 109.47345 * 60.00390 * 20 18 17 34 34 H 1.09002 * 109.46742 * 180.02562 * 20 18 17 35 35 H 1.08998 * 109.47020 * 299.99766 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3919 2.1524 -1.0939 5 1 2.3733 1.8574 -2.0178 6 6 2.7859 3.3881 -0.6363 7 6 3.2355 4.4525 -1.4266 8 1 3.3845 4.3124 -2.4871 9 6 3.4925 5.7008 -0.8414 10 7 3.4267 5.8400 0.4564 11 14 3.9287 7.1645 -1.9169 12 1 2.7016 7.9492 -2.2065 13 1 4.9103 8.0243 -1.2081 14 1 4.5209 6.6836 -3.1910 15 7 2.6652 3.3953 0.6881 16 6 2.2051 2.2172 1.0915 17 6 1.9253 1.8247 2.5193 18 6 3.1849 1.2134 3.1364 19 6 4.2814 2.2774 3.2166 20 6 2.8670 0.7017 4.5428 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.6041 6.7035 0.8612 27 1 1.6336 2.7074 3.0884 28 1 1.1173 1.0934 2.5435 29 1 3.5275 0.3846 2.5170 30 1 5.1789 1.8418 3.6558 31 1 4.5079 2.6419 2.2146 32 1 3.9389 3.1063 3.8360 33 1 2.0858 -0.0563 4.4857 34 1 3.7645 0.2666 4.9826 35 1 2.5245 1.5306 5.1622 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260660040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -1.729492 kcal Electronic energy + Delta-G solvation = -15487.374391 eV Core-core repulsion = 13098.071807 eV Total energy + Delta-G solvation = -2389.302584 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81367 -37.15414 -35.40988 -34.19316 -32.53020 -30.09608 -28.37085 -27.84212 -26.07263 -23.41167 -21.83772 -21.24463 -19.78620 -18.74927 -17.51825 -16.41506 -15.72014 -15.47613 -15.28028 -14.66885 -14.38263 -14.30715 -14.24885 -13.24529 -13.04897 -13.00015 -12.86208 -12.75413 -12.68506 -12.36279 -12.07991 -11.96862 -11.81034 -11.71109 -11.54020 -11.40008 -11.03556 -9.89767 -9.59613 -8.69942 -8.28784 -6.18669 1.37177 1.42862 1.56915 1.86716 2.28675 2.77697 3.10997 3.66340 4.08982 4.22157 4.27136 4.32494 4.36115 4.58995 4.66028 4.82476 4.86681 4.94614 4.98879 5.06891 5.10833 5.12912 5.21299 5.23357 5.30844 5.35253 5.45700 5.54684 5.65799 5.68892 5.91675 6.24546 6.39561 6.81540 7.10258 7.60641 8.41742 8.67290 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.009176 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.053679 B = 3050.625640 C = 3857.673157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.127 4.127 4 N -0.614 5.614 5 H 0.404 0.596 6 C 0.334 3.666 7 C -0.501 4.501 8 H 0.082 0.918 9 C 0.034 3.966 10 N -0.789 5.789 11 Si 0.989 3.011 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.256 1.256 15 N -0.539 5.539 16 C -0.013 4.013 17 C -0.015 4.015 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.136 4.136 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.273 0.727 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 -8.755 2.017 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C -0.240 4.240 4 N -0.221 5.221 5 H 0.239 0.761 6 C 0.087 3.913 7 C -0.540 4.540 8 H 0.100 0.900 9 C -0.185 4.185 10 N -0.415 5.415 11 Si 0.810 3.190 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.180 1.180 15 N -0.261 5.261 16 C -0.146 4.146 17 C -0.054 4.054 18 C -0.099 4.099 19 C -0.187 4.187 20 C -0.193 4.193 21 H 0.065 0.935 22 H 0.098 0.902 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.956 -8.020 2.814 8.722 hybrid contribution 0.084 0.286 -1.562 1.590 sum -1.872 -7.734 1.252 8.055 Atomic orbital electron populations 1.21702 0.94856 1.01847 1.00928 1.19704 0.95679 0.88553 1.02162 1.21025 1.18161 0.97405 0.87393 1.43286 1.57301 1.13401 1.08157 0.76055 1.20427 0.96574 0.84628 0.89711 1.18466 1.46292 0.94204 0.95054 0.89987 1.26633 0.93425 1.02109 0.96286 1.70163 1.34409 1.24880 1.12029 0.85109 0.78479 0.76802 0.78593 1.19317 1.19792 1.18002 1.71082 1.25675 1.21013 1.08367 1.20994 1.05965 0.92299 0.95349 1.19800 0.97411 0.98805 0.89354 1.20971 0.94621 0.97006 0.97257 1.21639 0.98291 0.98334 1.00469 1.21777 1.02020 1.00947 0.94528 0.93536 0.90243 0.94553 0.90217 0.91908 0.91731 0.94029 0.90452 0.92093 0.92471 0.95511 0.94269 0.91273 0.91741 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.89 71.98 0.71 -3.09 16 2 C -0.02 -0.71 6.04 29.85 0.18 -0.53 16 3 C -0.13 -5.58 6.51 41.37 0.27 -5.31 16 4 N -0.61 -29.22 6.25 -179.87 -1.13 -30.35 16 5 H 0.40 16.52 8.96 -92.71 -0.83 15.69 16 6 C 0.33 19.02 7.61 133.59 1.02 20.04 16 7 C -0.50 -28.22 9.45 23.18 0.22 -28.00 16 8 H 0.08 4.28 7.86 -2.91 -0.02 4.25 16 9 C 0.03 1.86 5.49 85.35 0.47 2.33 16 10 N -0.79 -45.91 11.92 21.88 0.26 -45.65 16 11 Si 0.99 40.77 29.57 68.60 2.03 42.80 16 12 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 15 N -0.54 -31.38 8.71 -182.23 -1.59 -32.97 16 16 C -0.01 -0.66 5.54 41.95 0.23 -0.43 16 17 C -0.02 -0.61 4.95 29.85 0.15 -0.46 16 18 C -0.08 -2.74 2.91 -10.79 -0.03 -2.77 16 19 C -0.13 -5.15 9.00 71.98 0.65 -4.50 16 20 C -0.14 -3.46 9.19 71.98 0.66 -2.80 16 21 H 0.05 1.37 7.74 -2.39 -0.02 1.35 16 22 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.27 14.55 8.29 -92.71 -0.77 13.78 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 2.62 7.49 -2.38 -0.02 2.60 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.30 6.81 -2.38 -0.02 1.28 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.24 290.98 4.33 -63.90 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.23 Total: 27.78 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.52 Total: -25.51 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -2.45 Total: -108.96 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -68.24 4.33 -63.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260660040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.172 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds