Wall clock time and date at job start Mon Mar 30 2020 03:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30401 * 1 3 3 Si 1.86797 * 120.00327 * 2 1 4 4 H 1.48501 * 109.46888 * 274.97602 * 3 2 1 5 5 H 1.48497 * 109.47099 * 34.97749 * 3 2 1 6 6 H 1.48500 * 109.47337 * 154.97948 * 3 2 1 7 7 C 1.40789 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99679 * 185.98385 * 7 2 1 9 9 C 1.38429 * 119.99945 * 5.98084 * 7 2 1 10 10 O 1.35419 * 127.76901 * 354.31820 * 9 7 2 11 11 N 1.20844 * 113.51533 * 179.97438 * 10 9 7 12 12 C 1.31451 * 114.21317 * 359.97438 * 11 10 9 13 13 C 1.46037 * 127.76508 * 174.31404 * 9 7 2 14 14 C 1.38510 * 137.95566 * 359.97438 * 13 9 7 15 15 C 1.38025 * 119.36636 * 180.02562 * 14 13 9 16 16 C 1.39132 * 121.35805 * 359.97438 * 15 14 13 17 17 C 1.36287 * 121.87051 * 0.02562 * 16 15 14 18 18 Cl 1.73609 * 120.23516 * 179.97438 * 17 16 15 19 19 H 0.97003 * 119.99812 * 0.02562 * 1 2 3 20 20 H 1.07998 * 120.31282 * 0.03872 * 14 13 9 21 21 H 1.08005 * 119.31895 * 179.97438 * 15 14 13 22 22 H 1.08002 * 119.06473 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3040 0.0000 0.0000 3 14 2.2381 1.6177 0.0000 4 1 2.3804 2.1070 -1.3948 5 1 1.4922 2.6200 0.8026 6 1 3.5843 1.4120 0.5921 7 6 2.0079 -1.2193 0.0005 8 1 3.0835 -1.2218 0.0981 9 6 1.3214 -2.4149 -0.1238 10 8 -0.0195 -2.6026 -0.1487 11 7 -0.3420 -3.7611 -0.2682 12 6 0.6694 -4.5967 -0.3497 13 6 1.8803 -3.7574 -0.2578 14 6 3.1309 -4.3501 -0.3132 15 6 3.2251 -5.7201 -0.4523 16 6 2.0892 -6.5190 -0.5377 17 6 0.8333 -5.9918 -0.4890 18 17 -0.5549 -7.0284 -0.6002 19 1 -0.4850 0.8401 -0.0004 20 1 4.0238 -3.7461 -0.2478 21 1 4.2007 -6.1815 -0.4958 22 1 2.2059 -7.5872 -0.6456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676940.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:49 Heat of formation + Delta-G solvation = 22.061174 kcal Electronic energy + Delta-G solvation = -12459.852803 eV Core-core repulsion = 10007.073079 eV Total energy + Delta-G solvation = -2452.779724 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.02225 -38.71117 -36.99831 -36.42156 -32.83560 -32.50110 -30.62211 -27.91376 -24.96878 -23.68947 -21.82399 -19.89872 -18.26343 -17.62592 -17.42956 -16.81873 -16.12703 -15.25662 -14.79068 -14.28237 -13.89199 -13.71960 -13.46736 -13.19147 -12.62412 -12.33498 -12.19968 -11.95877 -11.66006 -11.64552 -10.91370 -10.72664 -9.93739 -9.21482 -8.91990 -6.80982 -0.00611 0.92981 1.35723 1.36946 1.49826 1.60649 1.80096 2.05688 2.70038 3.08879 3.23876 3.55188 4.10883 4.26749 4.57336 4.60927 4.70626 4.96085 5.30135 5.55082 5.69516 5.72101 5.84883 5.98934 6.11515 6.30560 7.76211 8.44240 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.050002 B = 0.008345 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.848746 B = 3354.461476 C = 3901.658426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.011 3.989 3 Si 1.024 2.976 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.355 4.355 8 H 0.148 0.852 9 C 0.132 3.868 10 O 0.031 5.969 11 N -0.507 5.507 12 C 0.072 3.928 13 C -0.333 4.333 14 C 0.013 3.987 15 C -0.248 4.248 16 C -0.033 4.033 17 C -0.120 4.120 18 Cl -0.098 7.098 19 H 0.316 0.684 20 H 0.142 0.858 21 H 0.155 0.845 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 0.881 -0.152 8.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.215 4.215 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.157 1.157 7 C -0.381 4.381 8 H 0.165 0.835 9 C 0.072 3.928 10 O -0.007 6.007 11 N -0.240 5.240 12 C -0.078 4.078 13 C -0.341 4.341 14 C -0.005 4.005 15 C -0.269 4.269 16 C -0.054 4.054 17 C -0.150 4.150 18 Cl -0.070 7.070 19 H 0.129 0.871 20 H 0.159 0.841 21 H 0.173 0.827 22 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.276 0.856 -0.157 6.336 hybrid contribution 0.106 0.221 -0.026 0.246 sum 6.382 1.077 -0.183 6.475 Atomic orbital electron populations 1.69651 1.10470 1.34315 1.23071 1.27871 0.95954 1.06736 0.90944 0.84541 0.79245 0.71920 0.80365 1.17789 1.18377 1.15675 1.19879 0.97650 0.87325 1.33253 0.83450 1.22789 0.83544 0.94079 0.92373 1.85041 1.22052 1.20066 1.73589 1.73305 1.23387 0.90114 1.37199 1.21476 0.91100 0.94793 1.00451 1.21202 0.95427 0.91547 1.25945 1.20383 0.93869 0.95073 0.91191 1.20733 0.98223 0.92316 1.15582 1.20646 0.89325 1.00784 0.94631 1.19452 0.88610 0.85912 1.21044 1.98237 1.44705 1.66618 1.97395 0.87138 0.84058 0.82708 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -34.80 12.11 21.97 0.27 -34.53 14 2 C 0.01 0.46 5.50 85.53 0.47 0.93 14 3 Si 1.02 28.59 29.57 68.60 2.03 30.62 14 4 H -0.25 -6.89 7.11 99.48 0.71 -6.18 14 5 H -0.26 -6.96 7.11 99.48 0.71 -6.26 14 6 H -0.23 -5.92 7.11 99.48 0.71 -5.21 14 7 C -0.35 -16.02 9.36 22.94 0.21 -15.80 14 8 H 0.15 5.60 7.87 -2.91 -0.02 5.58 14 9 C 0.13 7.03 7.10 24.34 0.17 7.20 14 10 O 0.03 1.84 9.58 57.81 0.55 2.39 14 11 N -0.51 -30.27 11.96 -48.65 -0.58 -30.85 14 12 C 0.07 3.90 7.41 42.39 0.31 4.22 14 13 C -0.33 -16.88 6.73 -18.72 -0.13 -17.00 14 14 C 0.01 0.54 10.09 22.28 0.22 0.77 14 15 C -0.25 -8.81 10.00 22.43 0.22 -8.59 14 16 C -0.03 -1.27 9.67 22.03 0.21 -1.06 14 17 C -0.12 -5.59 6.35 22.53 0.14 -5.44 14 18 Cl -0.10 -4.14 28.98 -2.72 -0.08 -4.22 14 19 H 0.32 12.53 8.29 -92.71 -0.77 11.77 14 20 H 0.14 4.65 8.06 -2.91 -0.02 4.63 14 21 H 0.16 4.11 8.06 -2.91 -0.02 4.09 14 22 H 0.15 4.52 8.06 -2.91 -0.02 4.50 14 Total: -1.00 -63.76 226.04 5.30 -58.46 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.26 Total: 12.91 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 1.85 Total: -34.77 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.32 Total: -65.38 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.55 Total: 2.39 kcal Atomic # 14 Polarization: 28.59 SS G_CDS: 2.03 Total: 30.62 kcal Atomic # 17 Polarization: -4.14 SS G_CDS: -0.08 Total: -4.22 kcal Total: -63.76 5.30 -58.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676940.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.522 kcal (2) G-P(sol) polarization free energy of solvation -63.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds