Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47192 * 2 1 4 4 C 1.35072 * 126.31441 * 83.67207 * 3 2 1 5 5 C 1.42231 * 105.54718 * 180.12711 * 4 3 2 6 6 C 1.41432 * 126.56797 * 179.87153 * 5 4 3 7 7 H 1.08000 * 119.99953 * 6.97568 * 6 5 4 8 8 C 1.39855 * 120.00118 * 186.96903 * 6 5 4 9 9 N 1.30885 * 119.99959 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99858 * 359.93277 * 8 6 5 11 11 H 1.48504 * 109.46990 * 179.97438 * 10 8 6 12 12 H 1.48502 * 109.47463 * 300.00193 * 10 8 6 13 13 H 1.48506 * 109.46957 * 60.00435 * 10 8 6 14 14 N 1.32752 * 106.86345 * 359.61270 * 5 4 3 15 15 N 1.28469 * 109.93226 * 0.24010 * 14 5 4 16 16 C 1.46508 * 124.85935 * 180.02562 * 15 14 5 17 17 C 1.53000 * 109.47153 * 354.02686 * 16 15 14 18 18 C 1.53000 * 109.47006 * 114.02538 * 16 15 14 19 19 C 1.52999 * 109.46902 * 234.02208 * 16 15 14 20 20 H 1.09002 * 109.47159 * 295.04070 * 1 2 3 21 21 H 1.09004 * 109.46669 * 55.03580 * 1 2 3 22 22 H 1.09000 * 109.47277 * 175.03362 * 1 2 3 23 23 H 1.08999 * 109.47298 * 239.99547 * 2 1 3 24 24 H 1.09007 * 109.46960 * 119.99415 * 2 1 3 25 25 H 1.07999 * 127.22458 * 359.97438 * 4 3 2 26 26 H 0.97002 * 120.00329 * 354.72354 * 9 8 6 27 27 H 1.08991 * 109.47059 * 59.99822 * 17 16 15 28 28 H 1.08997 * 109.47078 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.46923 * 299.99607 * 17 16 15 30 30 H 1.08994 * 109.47556 * 64.20299 * 18 16 15 31 31 H 1.08999 * 109.47105 * 184.20715 * 18 16 15 32 32 H 1.09007 * 109.47081 * 304.20651 * 18 16 15 33 33 H 1.08996 * 109.46845 * 53.85936 * 19 16 15 34 34 H 1.09005 * 109.46756 * 173.85252 * 19 16 15 35 35 H 1.08994 * 109.47123 * 293.85256 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1859 2.2149 1.0818 5 6 2.6788 3.4512 0.5802 6 6 2.9929 4.6030 1.3385 7 1 2.9717 4.5615 2.4175 8 6 3.3310 5.7957 0.6911 9 7 3.6212 6.8617 1.3928 10 14 3.3696 5.8670 -1.1751 11 1 3.7534 7.2339 -1.6105 12 1 4.3608 4.8871 -1.6876 13 1 2.0245 5.5368 -1.7110 14 7 2.7928 3.3151 -0.7354 15 7 2.4199 2.1373 -1.0878 16 6 2.4137 1.6379 -2.4651 17 6 2.7744 2.7761 -3.4219 18 6 3.4393 0.5110 -2.6035 19 6 1.0211 1.1051 -2.8081 20 1 -0.3633 0.4350 0.9311 21 1 -0.3633 0.5890 -0.8422 22 1 -0.3634 -1.0238 -0.0890 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.9759 1.9646 2.1111 26 1 3.5279 6.8472 2.3583 27 1 3.7664 3.1556 -3.1774 28 1 2.7694 2.4046 -4.4466 29 1 2.0437 3.5789 -3.3232 30 1 3.1416 -0.3302 -1.9776 31 1 3.4883 0.1901 -3.6441 32 1 4.4187 0.8702 -2.2876 33 1 0.2773 1.8755 -2.6051 34 1 0.9854 0.8348 -3.8635 35 1 0.8087 0.2257 -2.2004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = 50.431824 kcal Electronic energy + Delta-G solvation = -16067.206430 eV Core-core repulsion = 13680.165730 eV Total energy + Delta-G solvation = -2387.040700 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05761 -36.31706 -33.76553 -33.07438 -29.70026 -28.31723 -27.22010 -27.00216 -25.08437 -23.14702 -20.54025 -19.44965 -18.62003 -16.93699 -16.02988 -14.85342 -14.52311 -14.00271 -13.61268 -13.37847 -13.10023 -12.78819 -12.28431 -12.18881 -12.15476 -11.96126 -11.76007 -11.53681 -11.34527 -11.05485 -10.86197 -10.74848 -10.43569 -10.36054 -10.04709 -9.25466 -8.97858 -8.25793 -7.64633 -7.50178 -6.82275 -4.20599 3.22985 3.50690 3.64569 3.77286 4.16566 4.32544 4.60515 4.88129 5.08765 5.18088 5.21636 5.30779 5.60054 5.63606 5.67489 5.68965 5.76703 5.86027 5.92221 5.98050 6.06547 6.08671 6.16797 6.20014 6.43475 6.50032 6.51924 6.75644 7.17147 7.23630 7.60795 7.98766 8.28027 8.68190 8.77864 9.22525 9.97229 10.54705 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.012008 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.297321 B = 2331.218186 C = 2961.696602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.016 3.984 4 C -0.286 4.286 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.073 0.927 8 C 0.046 3.954 9 N -0.854 5.854 10 Si 1.117 2.883 11 H -0.318 1.318 12 H -0.275 1.275 13 H -0.285 1.285 14 N -0.416 5.416 15 N -0.312 5.312 16 C 0.181 3.819 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.168 4.168 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.275 0.725 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 -13.057 -8.276 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.110 4.110 4 C -0.317 4.317 5 C 0.045 3.955 6 C -0.542 4.542 7 H 0.091 0.909 8 C -0.170 4.170 9 N -0.482 5.482 10 Si 0.950 3.050 11 H -0.249 1.249 12 H -0.202 1.202 13 H -0.212 1.212 14 N -0.250 5.250 15 N -0.095 5.095 16 C 0.097 3.903 17 C -0.201 4.201 18 C -0.219 4.219 19 C -0.226 4.226 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.417 -11.573 -10.637 16.086 hybrid contribution -0.633 -1.446 2.387 2.862 sum -4.050 -13.019 -8.250 15.936 Atomic orbital electron populations 1.21889 0.95316 1.00769 1.02748 1.20142 0.95585 0.91429 1.02082 1.20838 1.06742 0.95074 0.88365 1.21280 1.16837 0.96485 0.97081 1.19548 0.93965 0.93703 0.88276 1.19644 1.46576 0.93671 0.94302 0.90860 1.27085 0.89592 0.91246 1.09054 1.70661 1.37136 1.30746 1.09642 0.82681 0.78581 0.71848 0.71909 1.24913 1.20151 1.21221 1.72912 1.34195 1.02628 1.15274 1.44978 1.51014 1.09088 1.04456 1.20378 0.95601 0.94391 0.79922 1.21927 1.03906 0.97625 0.96647 1.22332 0.99579 0.97953 1.01993 1.22523 0.95972 1.02195 1.01862 0.92319 0.92323 0.93016 0.91447 0.90887 0.86017 0.91402 0.91015 0.92053 0.91538 0.91799 0.91344 0.91761 0.91849 0.91384 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.19 37.16 0.34 -1.65 16 2 C -0.05 -0.81 5.38 -27.88 -0.15 -0.96 16 3 C 0.02 0.33 5.68 -81.92 -0.47 -0.14 16 4 C -0.29 -6.97 10.89 -39.18 -0.43 -7.40 16 5 C 0.19 5.38 6.52 -84.72 -0.55 4.83 16 6 C -0.50 -15.11 9.86 -37.76 -0.37 -15.48 16 7 H 0.07 2.24 8.05 -52.49 -0.42 1.82 16 8 C 0.05 1.37 5.51 -17.35 -0.10 1.28 16 9 N -0.85 -25.85 13.66 55.54 0.76 -25.09 16 10 Si 1.12 29.61 25.78 -169.99 -4.38 25.23 16 11 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 12 H -0.27 -7.16 6.77 56.52 0.38 -6.77 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 14 N -0.42 -10.90 6.29 32.34 0.20 -10.70 16 15 N -0.31 -6.80 3.20 -44.37 -0.14 -6.95 16 16 C 0.18 3.04 1.06 -131.82 -0.14 2.90 16 17 C -0.14 -2.42 7.91 37.16 0.29 -2.12 16 18 C -0.16 -2.25 8.49 37.16 0.32 -1.93 16 19 C -0.17 -2.29 7.31 37.16 0.27 -2.02 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.81 6.05 -51.93 -0.31 0.50 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.90 4.11 -51.93 -0.21 0.69 16 24 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 25 H 0.12 2.77 8.06 -52.49 -0.42 2.35 16 26 H 0.28 8.07 8.72 -40.82 -0.36 7.72 16 27 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.83 5.53 -51.93 -0.29 0.54 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.92 3.93 -51.93 -0.20 0.72 16 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -32.83 273.28 -5.67 -38.50 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.25 Total: -2.41 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -0.98 Total: -22.71 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.82 Total: -42.73 kcal Atomic # 14 Polarization: 29.61 SS G_CDS: -4.38 Total: 25.23 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.83 -5.67 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.936 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds