Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47192 * 2 1 4 4 C 1.35072 * 126.31441 * 83.67207 * 3 2 1 5 5 C 1.42231 * 105.54718 * 180.12711 * 4 3 2 6 6 C 1.41432 * 126.56797 * 179.87153 * 5 4 3 7 7 H 1.08000 * 119.99953 * 6.97568 * 6 5 4 8 8 C 1.39855 * 120.00118 * 186.96903 * 6 5 4 9 9 N 1.30885 * 119.99959 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99858 * 359.93277 * 8 6 5 11 11 H 1.48504 * 109.46990 * 179.97438 * 10 8 6 12 12 H 1.48502 * 109.47463 * 300.00193 * 10 8 6 13 13 H 1.48506 * 109.46957 * 60.00435 * 10 8 6 14 14 N 1.32752 * 106.86345 * 359.61270 * 5 4 3 15 15 N 1.28469 * 109.93226 * 0.24010 * 14 5 4 16 16 C 1.46508 * 124.85935 * 180.02562 * 15 14 5 17 17 C 1.53000 * 109.47153 * 354.02686 * 16 15 14 18 18 C 1.53000 * 109.47006 * 114.02538 * 16 15 14 19 19 C 1.52999 * 109.46902 * 234.02208 * 16 15 14 20 20 H 1.09002 * 109.47159 * 295.04070 * 1 2 3 21 21 H 1.09004 * 109.46669 * 55.03580 * 1 2 3 22 22 H 1.09000 * 109.47277 * 175.03362 * 1 2 3 23 23 H 1.08999 * 109.47298 * 239.99547 * 2 1 3 24 24 H 1.09007 * 109.46960 * 119.99415 * 2 1 3 25 25 H 1.07999 * 127.22458 * 359.97438 * 4 3 2 26 26 H 0.97002 * 120.00329 * 354.72354 * 9 8 6 27 27 H 1.08991 * 109.47059 * 59.99822 * 17 16 15 28 28 H 1.08997 * 109.47078 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.46923 * 299.99607 * 17 16 15 30 30 H 1.08994 * 109.47556 * 64.20299 * 18 16 15 31 31 H 1.08999 * 109.47105 * 184.20715 * 18 16 15 32 32 H 1.09007 * 109.47081 * 304.20651 * 18 16 15 33 33 H 1.08996 * 109.46845 * 53.85936 * 19 16 15 34 34 H 1.09005 * 109.46756 * 173.85252 * 19 16 15 35 35 H 1.08994 * 109.47123 * 293.85256 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1859 2.2149 1.0818 5 6 2.6788 3.4512 0.5802 6 6 2.9929 4.6030 1.3385 7 1 2.9717 4.5615 2.4175 8 6 3.3310 5.7957 0.6911 9 7 3.6212 6.8617 1.3928 10 14 3.3696 5.8670 -1.1751 11 1 3.7534 7.2339 -1.6105 12 1 4.3608 4.8871 -1.6876 13 1 2.0245 5.5368 -1.7110 14 7 2.7928 3.3151 -0.7354 15 7 2.4199 2.1373 -1.0878 16 6 2.4137 1.6379 -2.4651 17 6 2.7744 2.7761 -3.4219 18 6 3.4393 0.5110 -2.6035 19 6 1.0211 1.1051 -2.8081 20 1 -0.3633 0.4350 0.9311 21 1 -0.3633 0.5890 -0.8422 22 1 -0.3634 -1.0238 -0.0890 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.9759 1.9646 2.1111 26 1 3.5279 6.8472 2.3583 27 1 3.7664 3.1556 -3.1774 28 1 2.7694 2.4046 -4.4466 29 1 2.0437 3.5789 -3.3232 30 1 3.1416 -0.3302 -1.9776 31 1 3.4883 0.1901 -3.6441 32 1 4.4187 0.8702 -2.2876 33 1 0.2773 1.8755 -2.6051 34 1 0.9854 0.8348 -3.8635 35 1 0.8087 0.2257 -2.2004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = 28.874290 kcal Electronic energy + Delta-G solvation = -16068.141235 eV Core-core repulsion = 13680.165730 eV Total energy + Delta-G solvation = -2387.975504 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.86453 -37.76825 -35.40960 -34.95691 -31.62180 -29.91712 -28.34408 -28.30004 -27.07421 -24.47620 -22.18062 -21.43054 -20.46085 -18.79510 -17.56490 -16.41255 -15.80615 -15.62725 -15.49411 -14.91938 -14.66998 -14.32372 -14.06618 -13.75525 -13.35384 -13.19684 -13.10880 -12.94637 -12.78269 -12.59466 -12.32632 -12.20018 -12.02865 -11.86625 -11.53424 -11.42040 -11.18920 -10.29917 -9.64136 -9.33581 -9.13039 -6.46099 1.40068 1.44855 1.59346 1.83689 2.18399 2.25042 2.50187 3.36632 3.63011 3.86651 3.90108 3.98861 4.12291 4.48670 4.50746 4.61292 4.66597 4.71938 4.74401 4.78766 4.84559 4.91331 4.98167 5.01515 5.12934 5.24411 5.28972 5.33530 5.44636 5.51565 5.57732 5.70748 6.24532 6.56902 6.74173 7.02808 7.97662 8.24391 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.012008 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.297321 B = 2331.218186 C = 2961.696602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.042 3.958 4 C -0.324 4.324 5 C 0.154 3.846 6 C -0.529 4.529 7 H 0.047 0.953 8 C 0.007 3.993 9 N -0.880 5.880 10 Si 1.160 2.840 11 H -0.311 1.311 12 H -0.273 1.273 13 H -0.286 1.286 14 N -0.424 5.424 15 N -0.309 5.309 16 C 0.158 3.842 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.161 4.161 20 H 0.043 0.957 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.269 0.731 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.108 0.892 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -16.693 -11.212 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.086 4.086 4 C -0.354 4.354 5 C 0.005 3.995 6 C -0.568 4.568 7 H 0.065 0.935 8 C -0.202 4.202 9 N -0.510 5.510 10 Si 0.989 3.011 11 H -0.242 1.242 12 H -0.199 1.199 13 H -0.214 1.214 14 N -0.258 5.258 15 N -0.093 5.093 16 C 0.077 3.923 17 C -0.203 4.203 18 C -0.212 4.212 19 C -0.219 4.219 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.143 0.857 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.381 -15.208 -13.573 20.849 hybrid contribution -0.383 -0.529 3.215 3.280 sum -4.764 -15.737 -10.358 19.433 Atomic orbital electron populations 1.21871 0.93538 1.03120 1.01853 1.20378 0.96910 0.87435 1.04292 1.21539 1.03459 0.97007 0.86608 1.21450 1.18965 0.96227 0.98714 1.19618 0.95880 0.94599 0.89407 1.19658 1.48374 0.95358 0.93453 0.93459 1.28042 0.89384 0.91037 1.11773 1.70701 1.39699 1.31227 1.09335 0.82127 0.78383 0.72001 0.68605 1.24166 1.19920 1.21362 1.72747 1.33488 1.05104 1.14486 1.45675 1.48758 1.07844 1.07019 1.21124 0.98924 0.95358 0.76916 1.21988 1.01402 0.97285 0.99615 1.22321 0.97027 0.96813 1.05064 1.22516 0.92672 1.01842 1.04824 0.93793 0.92773 0.89040 0.88488 0.89446 0.85687 0.92087 0.93746 0.87137 0.93999 0.90293 0.87123 0.94192 0.93929 0.87309 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.19 71.98 0.66 -2.60 16 2 C -0.05 -1.34 5.38 29.85 0.16 -1.18 16 3 C 0.04 1.67 5.68 41.20 0.23 1.90 16 4 C -0.32 -16.00 10.89 22.53 0.25 -15.75 16 5 C 0.15 8.89 6.52 40.78 0.27 9.16 16 6 C -0.53 -33.69 9.86 23.45 0.23 -33.46 16 7 H 0.05 3.12 8.05 -2.91 -0.02 3.10 16 8 C 0.01 0.46 5.51 85.23 0.47 0.93 16 9 N -0.88 -55.81 13.66 21.81 0.30 -55.51 16 10 Si 1.16 62.20 25.78 68.60 1.77 63.96 16 11 H -0.31 -16.08 7.11 99.48 0.71 -15.37 16 12 H -0.27 -14.28 6.77 99.48 0.67 -13.60 16 13 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 14 N -0.42 -22.34 6.29 -51.60 -0.32 -22.66 16 15 N -0.31 -12.96 3.20 -294.30 -0.94 -13.90 16 16 C 0.16 4.72 1.06 3.60 0.00 4.73 16 17 C -0.15 -4.49 7.91 71.98 0.57 -3.92 16 18 C -0.15 -3.55 8.49 71.98 0.61 -2.94 16 19 C -0.16 -3.57 7.31 71.98 0.53 -3.04 16 20 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.27 6.05 -2.39 -0.01 1.25 16 22 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.10 1.98 4.11 -2.39 -0.01 1.97 16 24 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.13 5.87 8.06 -2.91 -0.02 5.85 16 26 H 0.27 16.77 8.72 -92.71 -0.81 15.96 16 27 H 0.04 1.60 7.93 -2.39 -0.02 1.58 16 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.57 5.53 -2.39 -0.01 1.56 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.09 1.70 3.93 -2.39 -0.01 1.69 16 Total: -1.00 -76.86 273.28 5.77 -71.09 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 0.99 Total: 3.20 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 3.98 Total: -46.18 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -0.97 Total: -92.07 kcal Atomic # 14 Polarization: 62.20 SS G_CDS: 1.77 Total: 63.96 kcal Total: -76.86 5.77 -71.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.964 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds