Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47144 * 2 1 4 4 N 1.40085 * 126.03862 * 269.97753 * 3 2 1 5 5 C 1.30834 * 108.20817 * 180.02562 * 4 3 2 6 6 C 1.50699 * 125.89933 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47015 * 304.96911 * 6 5 4 8 8 H 1.08009 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00185 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00166 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99729 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47494 * 89.99776 * 11 9 7 13 13 H 1.48507 * 109.46950 * 209.99439 * 11 9 7 14 14 H 1.48496 * 109.47128 * 329.99152 * 11 9 7 15 15 C 1.39872 * 108.20060 * 359.77700 * 5 4 3 16 16 C 1.34953 * 126.03793 * 89.99521 * 3 2 1 17 17 C 1.50697 * 126.12826 * 359.94975 * 16 3 2 18 18 C 1.52997 * 109.47466 * 144.99575 * 17 16 3 19 19 C 1.52999 * 109.46961 * 264.99926 * 17 16 3 20 20 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47524 * 300.00305 * 1 2 3 22 22 H 1.08998 * 109.47326 * 59.99831 * 1 2 3 23 23 H 1.08997 * 109.47124 * 239.99558 * 2 1 3 24 24 H 1.09006 * 109.46867 * 119.99790 * 2 1 3 25 25 H 1.08989 * 109.47388 * 64.97083 * 6 5 4 26 26 H 1.09005 * 109.47096 * 184.97632 * 6 5 4 27 27 H 0.96995 * 120.00302 * 180.02562 * 10 9 7 28 28 H 1.08003 * 126.03898 * 180.23428 * 15 5 4 29 29 H 1.09002 * 109.47120 * 24.99328 * 17 16 3 30 30 H 1.09002 * 109.47153 * 59.99773 * 18 17 16 31 31 H 1.09001 * 109.46832 * 299.99964 * 18 17 16 32 32 H 1.09004 * 109.47261 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46716 * 299.99650 * 19 17 16 34 34 H 1.09000 * 109.47486 * 59.99568 * 19 17 16 35 35 H 1.09001 * 109.47362 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 -1.1328 5 6 2.7090 3.3322 -0.7321 6 6 3.1140 4.4777 -1.6237 7 6 4.1858 4.0171 -2.5777 8 1 4.5381 2.9967 -2.5423 9 6 4.7159 4.8979 -3.4965 10 7 5.6509 4.4957 -4.3295 11 14 4.1060 6.6624 -3.5582 12 1 4.9278 7.5023 -2.6503 13 1 4.2196 7.1771 -4.9466 14 1 2.6858 6.7106 -3.1271 15 6 2.7070 3.3425 0.6665 16 6 2.2829 2.1298 1.0913 17 6 2.1279 1.6950 2.5258 18 6 3.2309 2.3318 3.3737 19 6 0.7610 2.1407 3.0489 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.2481 4.8220 -2.1888 26 1 3.4980 5.2951 -1.0132 27 1 6.0240 5.1155 -4.9756 28 1 2.9951 4.1713 1.2963 29 1 2.2038 0.6094 2.5867 30 1 3.1550 3.4174 3.3129 31 1 4.2047 2.0142 3.0010 32 1 3.1185 2.0176 4.4115 33 1 0.6851 3.2264 2.9880 34 1 -0.0248 1.6871 2.4449 35 1 0.6490 1.8267 4.0867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260719192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = 31.306737 kcal Electronic energy + Delta-G solvation = -15176.982778 eV Core-core repulsion = 12789.112753 eV Total energy + Delta-G solvation = -2387.870026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.17478 -36.68737 -35.69308 -34.79554 -32.25775 -29.88547 -29.39606 -27.97804 -25.42271 -23.93606 -23.21820 -20.71337 -19.68605 -18.86980 -17.79138 -16.36015 -16.06966 -15.79183 -15.06787 -14.94841 -14.80974 -14.36206 -14.10510 -13.88106 -13.82421 -13.26303 -12.94170 -12.86066 -12.71510 -12.52076 -12.26907 -12.05927 -11.97348 -11.86906 -11.62289 -11.59833 -11.12569 -10.76955 -9.82151 -9.27618 -8.28340 -6.33251 1.08987 1.37279 1.40629 1.52906 1.78253 2.02887 2.37590 3.05686 3.59706 3.68030 3.96516 4.10182 4.19403 4.23866 4.32856 4.49164 4.59640 4.78002 4.79279 4.85951 4.89326 4.94982 5.00657 5.04524 5.08943 5.16252 5.23338 5.33701 5.45784 5.50403 5.62780 5.85558 6.28571 6.38334 6.70363 7.06839 7.28482 8.89296 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033773 B = 0.007151 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.860364 B = 3914.568653 C = 4298.933184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 N -0.381 5.381 4 N -0.341 5.341 5 C 0.085 3.915 6 C 0.062 3.938 7 C -0.517 4.517 8 H 0.019 0.981 9 C 0.004 3.996 10 N -0.953 5.953 11 Si 0.958 3.042 12 H -0.257 1.257 13 H -0.281 1.281 14 H -0.247 1.247 15 C -0.294 4.294 16 C 0.094 3.906 17 C -0.025 4.025 18 C -0.140 4.140 19 C -0.137 4.137 20 H 0.105 0.895 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.268 0.732 28 H 0.153 0.847 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 -6.312 18.154 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.003 4.003 3 N -0.163 5.163 4 N -0.163 5.163 5 C -0.081 4.081 6 C 0.023 3.977 7 C -0.556 4.556 8 H 0.038 0.962 9 C -0.193 4.193 10 N -0.593 5.593 11 Si 0.779 3.221 12 H -0.182 1.182 13 H -0.207 1.207 14 H -0.170 1.170 15 C -0.323 4.323 16 C -0.034 4.034 17 C -0.046 4.046 18 C -0.198 4.198 19 C -0.195 4.195 20 H 0.124 0.876 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.099 0.901 24 H 0.139 0.861 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.566 -7.176 16.993 21.772 hybrid contribution 0.559 1.070 -0.340 1.254 sum -11.007 -6.106 16.653 20.875 Atomic orbital electron populations 1.22160 0.93019 1.04348 1.02192 1.21941 0.96343 0.77019 1.05004 1.49024 1.51501 1.12782 1.02970 1.77359 1.25065 1.05158 1.08750 1.22579 0.96471 0.94114 0.94896 1.18058 0.95360 0.91196 0.93071 1.21110 1.20187 0.97185 1.17084 0.96250 1.26052 0.94614 1.04320 0.94272 1.70075 1.29350 1.37882 1.22031 0.85558 0.80446 0.78108 0.77949 1.18170 1.20670 1.17015 1.21311 1.17461 1.00255 0.93296 1.21609 0.98804 0.91450 0.91580 1.19929 0.98161 1.01415 0.85050 1.21816 0.96726 1.01257 0.99962 1.21837 0.93893 1.01716 1.02045 0.87600 0.91292 0.94358 0.90054 0.86141 0.95055 0.93338 0.92331 0.82983 0.88563 0.92325 0.93671 0.89193 0.92873 0.92837 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 71.98 0.74 -2.47 16 2 C 0.12 2.92 6.96 86.38 0.60 3.52 16 3 N -0.38 -13.82 3.61 -334.70 -1.21 -15.03 16 4 N -0.34 -16.70 12.54 -47.38 -0.59 -17.30 16 5 C 0.08 4.15 6.43 43.10 0.28 4.42 16 6 C 0.06 3.28 4.62 29.10 0.13 3.42 16 7 C -0.52 -32.76 9.62 25.60 0.25 -32.51 16 8 H 0.02 1.39 7.98 -2.91 -0.02 1.36 16 9 C 0.00 0.23 5.47 84.65 0.46 0.69 16 10 N -0.95 -62.80 13.96 21.45 0.30 -62.50 16 11 Si 0.96 45.84 27.47 68.60 1.88 47.72 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 15 C -0.29 -11.56 9.90 21.99 0.22 -11.34 16 16 C 0.09 3.05 5.85 41.40 0.24 3.30 16 17 C -0.03 -0.52 3.11 -11.54 -0.04 -0.56 16 18 C -0.14 -2.61 8.78 71.98 0.63 -1.98 16 19 C -0.14 -2.25 9.18 71.98 0.66 -1.59 16 20 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 1.26 6.55 -2.39 -0.02 1.25 16 22 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.12 2.09 6.98 -2.38 -0.02 2.07 16 25 H 0.03 1.65 7.20 -2.39 -0.02 1.63 16 26 H 0.05 2.36 7.55 -2.38 -0.02 2.34 16 27 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 28 H 0.15 5.25 7.37 -2.91 -0.02 5.23 16 29 H 0.10 1.58 6.95 -2.39 -0.02 1.56 16 30 H 0.06 1.16 7.28 -2.39 -0.02 1.15 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.89 6.55 -2.39 -0.02 0.88 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.86 288.19 5.55 -74.31 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.00 Total: 7.88 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.18 Total: -35.09 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -1.50 Total: -94.83 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -79.86 5.55 -74.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.617 kcal (2) G-P(sol) polarization free energy of solvation -79.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds